New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =140 (0.400)20 (0.070) 9/96 NT 12.5% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 159 (0.530)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 354 total aligned reads displayed.

GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGT  >  CP009273/248295‑248427
                                                                 |                                                                   
ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   <  1:7764336/68‑1 (MQ=255)
cgccgcggcgttcatcccaggttttacgcgcggtggcgatttgatcagctttattcagccgcggcggg                                                                   <  1:5968022‑M2/3‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:4296044‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAAACGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:25692818‑M1/67‑1 (MQ=255)
   CGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggcg                                                                 >  1:790347‑M1/1‑67 (MQ=255)
      ggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:10973000‑M2/9‑1 (MQ=255)
      ggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:2367776‑M2/9‑1 (MQ=255)
      ggcgttcatcccagggtttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:23906426‑M2/9‑1 (MQ=255)
      ggcgttcatcccacgttttacgcgccggggcgattacatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:15229775‑M2/9‑1 (MQ=255)
      GGCTGAATAAAGCTGATCTCATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:8936071‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:3702618‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:8231345‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:18305262‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:23396587‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:27111540‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:6370660‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:12723115‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:2848100‑M1/1‑68 (MQ=255)
      GGCGGAATAAAGCTGATCTAATCGCCCCCGCGCGAAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:647170‑M1/1‑68 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgtgg                                                           <  1:1668989/67‑2 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:21730956/68‑1 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:1898678/68‑1 (MQ=255)
         gttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGtgtg                                                          <  1:20067578‑M2/12‑1 (MQ=255)
         gttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGtgtg                                                          <  1:4805366‑M2/12‑1 (MQ=255)
         ggAATAAACCTGATCTAATCGCCCCCCCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:2517415/67‑1 (MQ=255)
          gAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGc                                                         <  1:1763297/68‑1 (MQ=255)
           tcatccccggtgttccgcgcgggggcgattagatcagctttattccgccgcggcGGGCGCGGTGTGCg                                                        <  1:19380067‑M2/14‑1 (MQ=255)
           aaTAACGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGc                                                         <  1:27625289/67‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:20817807/67‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:2058665/67‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        >  1:1887797/1‑67 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGt                                                       <  1:10568411/68‑1 (MQ=255)
            aTAAAGCTGATCAAAGCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        <  1:10181011/67‑1 (MQ=255)
             tAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTc                                                      <  1:22139251/68‑1 (MQ=255)
              aaaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        >  1:28651907/1‑65 (MQ=255)
               aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg                                                    <  1:17895202/68‑1 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCGGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:5368961/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:3435940/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:8722700/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:13433829/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:10018809/1‑68 (MQ=255)
                 ccccaccagacgcaCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:9163683‑M1/54‑1 (MQ=255)
                  cccaccagacgcaCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggtg                                                 <  1:14256417‑M1/55‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:18074257/66‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:24848475/66‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:7161472/1‑66 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:7855659/1‑66 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:25924627/1‑66 (MQ=255)
                        tAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCt                                            >  1:14966211/1‑67 (MQ=255)
                        tAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCt                                            >  1:25440625/1‑67 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGACCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:6810522/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:29037554/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:14861145/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:670821/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:19541657/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:5636251/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:2311524/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGAGGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:3201535/68‑1 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:4044554/1‑68 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:12259293/1‑68 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:12469567/1‑68 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:15690910/1‑68 (MQ=255)
                            cGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtg                                       >  1:19037525/1‑68 (MQ=255)
                             gCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgt                                      >  1:26683769/1‑68 (MQ=255)
                              ccACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgtg                                     >  1:947554/1‑68 (MQ=255)
                                ACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:11120521‑M1/68‑1 (MQ=255)
                                ACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:397520‑M1/68‑1 (MQ=255)
                                ACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:26758207‑M1/68‑1 (MQ=255)
                                ACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:5897298‑M1/68‑1 (MQ=255)
                                ACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:8497234‑M1/68‑1 (MQ=255)
                                  CGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGt                                 <  1:21029762‑M1/68‑1 (MQ=255)
                                     GCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg                               >  1:11379442‑M1/1‑67 (MQ=255)
                                     GCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg                               >  1:2831832‑M1/1‑67 (MQ=255)
                                        tAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTg                           >  1:8170411/1‑68 (MQ=255)
                                             ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc                       >  1:7481906/1‑67 (MQ=255)
                                             ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc                       >  1:22674327/1‑67 (MQ=255)
                                             ccTGGGATGAACGCCGCGGCGGGCGCGGTCTGCGTCTGGTGGGGCTGCATGTGACGTTCCTTGAccc                       >  1:9327984/1‑67 (MQ=255)
                                                  gATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAAt                 >  1:9720520/1‑68 (MQ=255)
                                                  gATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAAt                 >  1:27552470/1‑68 (MQ=255)
                                                   aTGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg                >  1:19208085/1‑68 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAGATg                <  1:16938584/67‑1 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg                <  1:11743093/67‑1 (MQ=255)
                                                     gAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGa              <  1:20443645/68‑1 (MQ=255)
                                                       aCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGaaa            <  1:12764645/68‑1 (MQ=255)
                                                       aCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGaaa            >  1:21394835/1‑68 (MQ=255)
                                                        cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg           <  1:23498984/68‑1 (MQ=255)
                                                         gccgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg           >  1:10736348‑M2/9‑67 (MQ=255)
                                                           cgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGa          <  1:16096031‑M2/60‑1 (MQ=255)
                                                           cgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACa        <  1:26395515‑M2/62‑1 (MQ=255)
                                                                 gggcgCTGTTTGCGTCTGGTGGGGATGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTgg   <  1:6068693/67‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTgg   <  1:27716199/67‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:22100994/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:24433951/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:18481802/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:17211781/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:13843495/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:27971371/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:3010239/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:5217341/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGGGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:22906856/68‑1 (MQ=255)
                                                                 |                                                                   
GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGT  >  CP009273/248295‑248427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.