| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3847022 = | NA (NA) | 9 (0.030) | 6/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
Only 100 of 370 total aligned reads displayed.
TCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCC > CP009273/3846984‑3847117 | tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta < 1:16839048/68‑1 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta > 1:26415278/1‑68 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta > 1:10020767/1‑68 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta < 1:15683387/68‑1 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta > 1:28834378/1‑68 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta > 1:1518000/1‑68 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta < 1:20605303/68‑1 (MQ=255) cTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtat < 1:16505552/68‑1 (MQ=255) tGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtata < 1:3847482/68‑1 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:24695267/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:17058977/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:18520004/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:15972694/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:18905513/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:19269208/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:5624346/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:8676355/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:23740271/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCGCCCCTTTTATAttt > 1:3109381/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGCGGAGCTGGAAACCGCTCCCCTTTTATAttt > 1:16287421/1‑68 (MQ=255) aCCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGc < 1:5996578/68‑1 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:6831029/1‑68 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt < 1:19879112/68‑1 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt < 1:18805390/68‑1 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:12762901/1‑68 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt < 1:21807917/68‑1 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:11508410/1‑68 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:23193808/1‑68 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:9354892/1‑68 (MQ=255) cgacaccaacccgcacgctaaatataaaaggggagcggtttcccgctcccctttTATATTTAGCGTGc < 1:24842887‑M2/14‑1 (MQ=255) aGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCgg > 1:17303776/1‑68 (MQ=255) gTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg > 1:22363346/1‑68 (MQ=255) caccaacccgcacgctaaatataaaaggggagcggtttcccgctcccctttTATATTTAGCGTGCggg < 1:10422316‑M2/17‑1 (MQ=255) caccaacccgcacgctaaatataaaaggggagcggtttcccgctcccctttTATATTTAGCGTGCggg < 1:10908693‑M2/17‑1 (MQ=255) caccaacccgcacgcaaaataaaaaaggggagcggtttcccgctcccctttTATATTTAGCGTGCggg < 1:26429386‑M2/17‑1 (MQ=255) aaTTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg < 1:7197265/66‑1 (MQ=255) aaTTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg < 1:7612442/66‑1 (MQ=255) ttCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTgg < 1:14349174/68‑1 (MQ=255) ttCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTgg > 1:8764469/1‑68 (MQ=255) tCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgt < 1:16403695/68‑1 (MQ=255) tCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgt < 1:9694156/68‑1 (MQ=255) acccgcacgctaaatataaaaggggagcggtttcccgctcccctttTATATTTAGCGTGCGGGTTGgt < 1:5427871‑M2/22‑1 (MQ=255) cAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgtg < 1:17813084/68‑1 (MQ=255) cAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgtg < 1:12911949/68‑1 (MQ=255) aGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgtg > 1:7015298/1‑67 (MQ=255) ttCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCgg > 1:24098215/1‑68 (MQ=255) ttCAACTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCg < 1:29132858/67‑1 (MQ=255) aGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgc < 1:23383208/68‑1 (MQ=255) gTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcg > 1:13493755/1‑68 (MQ=255) gTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcg > 1:41714/1‑68 (MQ=255) cGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgat > 1:12293213/1‑68 (MQ=255) cGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgat < 1:28038594/68‑1 (MQ=255) cGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgat < 1:16651723/68‑1 (MQ=255) cGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgat < 1:4508257/68‑1 (MQ=255) cGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgat < 1:1980134/68‑1 (MQ=255) aCCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgatgc < 1:15085242/67‑1 (MQ=255) aCCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgat > 1:25987266/1‑65 (MQ=255) ccAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTg > 1:28769866/1‑68 (MQ=255) ccAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTg > 1:2271268/1‑68 (MQ=255) cAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGa < 1:3247370/68‑1 (MQ=255) cAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGa < 1:12565159/68‑1 (MQ=255) AAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACg > 1:16221879‑M1/1‑68 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgtg < 1:26733001‑M1/48‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGCCGCa < 1:21650869‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:10211083‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:26135027‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:25065428‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCGTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:24567661‑M1/68‑1 (MQ=255) GGAGCGTGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:6583122‑M1/1‑66 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:19713857‑M1/66‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:18179034‑M1/1‑66 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:4094131‑M1/1‑66 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:13634131‑M1/66‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:13032103‑M1/66‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:12064452‑M1/1‑66 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:11829575‑M1/66‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:28379005‑M1/1‑66 (MQ=255) AGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCtt < 1:13850956‑M1/68‑1 (MQ=255) GGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTAt < 1:3478909‑M1/67‑1 (MQ=255) GGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTAt < 1:27057483‑M1/67‑1 (MQ=255) aaaCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCg > 1:10684334/1‑67 (MQ=255) aaaCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCg < 1:27218558/67‑1 (MQ=255) aaCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGcc < 1:17472269/68‑1 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGc > 1:21234764/1‑66 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:21889194‑M2/56‑1 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:5305732‑M2/56‑1 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:8366087‑M2/56‑1 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:5873590‑M2/56‑1 (MQ=255) gctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTAc < 1:1372888‑M2/58‑1 (MQ=255) tcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTAcc < 1:25541890‑M2/59‑1 (MQ=255) ctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctc < 1:27496036‑M2/64‑1 (MQ=255) ctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctc < 1:7853098‑M2/64‑1 (MQ=255) ctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctc < 1:14543692‑M2/64‑1 (MQ=255) tttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct < 1:27632374‑M2/65‑1 (MQ=255) tttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct < 1:6171914‑M2/65‑1 (MQ=255) tttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct < 1:222468‑M2/65‑1 (MQ=255) tttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct < 1:20707278‑M2/65‑1 (MQ=255) ttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctctc < 1:2779688‑M2/66‑1 (MQ=255) tataTTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTccc > 1:23933319/1‑68 (MQ=255) tataTTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTccc > 1:11181598/1‑68 (MQ=255) | TCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCC > CP009273/3846984‑3847117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |