| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4549748 | 225 (0.640) | 3 (0.010) | 3/100 | NT | 1.4% | coding (70/462 nt) | yjiG | SpmB family inner membrane protein |
| ? | CP009273 | = 4549757 | 237 (0.750) | coding (61/462 nt) | yjiG | SpmB family inner membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 288 total aligned reads displayed.
TTCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATGCTTGCG > CP009273/4549690‑4549824 | ttCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa > 1:8151350/1‑68 (MQ=255)ttCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa < 1:771936/68‑1 (MQ=255)ttCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa > 1:28642658/1‑68 (MQ=255)ttCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa > 1:27446932/1‑68 (MQ=255)ttCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa < 1:20661811/68‑1 (MQ=255) tCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa > 1:798579/1‑67 (MQ=255) tCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa > 1:11449761/1‑67 (MQ=255) cAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAgc > 1:14840428‑M2/1‑66 (MQ=255) cAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAgc > 1:1559514‑M2/1‑66 (MQ=255) cAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAgc > 1:18463189‑M2/1‑66 (MQ=255) aGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAgcc < 1:8898117‑M2/68‑4 (MQ=255) cTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgc < 1:23069498/68‑1 (MQ=255) cTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgc < 1:18130920/68‑1 (MQ=255) cTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgc < 1:27393635/68‑1 (MQ=255) tgatgaCAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgcgcg < 1:15396242/68‑1 (MQ=255) tgaCAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGcc < 1:21980973/67‑1 (MQ=255) gaCAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCa > 1:19681917/1‑67 (MQ=255) aCAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc > 1:9830459/1‑68 (MQ=255) aCAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc > 1:13357858/1‑68 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:23912234/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:13234632/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:955271/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:14111372/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:12262206/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:4871859/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATc < 1:6947510/67‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:29043772/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:4090828/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:5720788/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:12753448/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:7131030/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:16188812/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:15788399/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:13477319/68‑1 (MQ=255) cAAACGCCATCACCACGTTTGGCAGCAGGGTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCg < 1:1467049/68‑1 (MQ=255) aaaCGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGa < 1:16713831/68‑1 (MQ=255) aaaCGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGa > 1:2415200/1‑68 (MQ=255) aaaCGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGa < 1:20043381/68‑1 (MQ=255) aCGCCATCACCACGTTTGGCAGCAGGTGGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATa < 1:2258935/68‑1 (MQ=255) cGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaa > 1:11893876/1‑68 (MQ=255) cGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaa > 1:9646758/1‑68 (MQ=255) cGCCATCACCACGGTGGGCAGCAGGTTGGTCGTGGCGATAGTAAAgccacgaccaacctgctgccaaa > 1:23560445‑M2/1‑45 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaaa < 1:3840450/68‑1 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaaa < 1:6030920/68‑1 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaaa < 1:13647508/68‑1 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaaa < 1:25286808/68‑1 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaaa < 1:24967552/68‑1 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaaa < 1:10013265/68‑1 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaa > 1:881221/1‑67 (MQ=255) gCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATaa > 1:25748554/1‑67 (MQ=255) ccATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAAc > 1:2942451/1‑68 (MQ=255) cATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAAc < 1:6465298/67‑1 (MQ=255) cATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAAc < 1:20738401/67‑1 (MQ=255) cATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAAc < 1:14247099/67‑1 (MQ=255) cATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACa > 1:10180841/1‑68 (MQ=255) caccacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACatat < 1:18219938/68‑1 (MQ=255) accacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACatat > 1:5261111/1‑67 (MQ=255) accacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACatat > 1:21006341/1‑67 (MQ=255) accacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACatat > 1:25527322/1‑67 (MQ=255) accacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACatat > 1:10676277/1‑67 (MQ=255) accacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATc < 1:21859862/68‑1 (MQ=255) accacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATc < 1:1121305/68‑1 (MQ=255) ccacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATcc < 1:17997689/68‑1 (MQ=255) cacGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCa > 1:4594111/1‑68 (MQ=255) cGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATg > 1:16403963/1‑68 (MQ=255) cGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATg > 1:19182169/1‑68 (MQ=255) cGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATg > 1:4017463/1‑68 (MQ=255) tttGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGAc > 1:26249023/1‑68 (MQ=255) tttGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGAc > 1:28122447/1‑68 (MQ=255) cagcagGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGtttt > 1:13178418/1‑68 (MQ=255) cagcagGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGtttt > 1:27640408/1‑68 (MQ=255) agcagGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGttttt > 1:21536727/1‑68 (MQ=255) ttGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGa < 1:22349459/67‑1 (MQ=255) ttGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGa < 1:8352314/67‑1 (MQ=255) ttGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGa < 1:12547092/67‑1 (MQ=255) ttGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGa < 1:25201675/67‑1 (MQ=255) ggTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCt < 1:17019770/68‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:3293889/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:29168479/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:1176941/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:4186324/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:27038017/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:13951020/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGa < 1:6106142/67‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAg > 1:12402111/1‑68 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAg < 1:14461149/68‑1 (MQ=255) cGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAg > 1:21752472/1‑68 (MQ=255) gTGGCGATAGTAAAGCCACGGGGCGCGCCAGGGATAAACTTATCCATGACGTTTTTGCGGACCTGAg < 1:24724325/67‑1 (MQ=255) gTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGt < 1:26692791/68‑1 (MQ=255) gTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGt < 1:17228484/68‑1 (MQ=255) ggCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTg < 1:6252433/68‑1 (MQ=255) ggCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTg < 1:8246710/68‑1 (MQ=255) gCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGCCCTGAGTTg > 1:1059067/1‑67 (MQ=255) cGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTc > 1:7316858/1‑68 (MQ=255) tAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATg < 1:28495115/68‑1 (MQ=255) aGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCAt > 1:15192279/1‑66 (MQ=255) aGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATGc < 1:19008466/68‑1 (MQ=255) aaaGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATGCt < 1:17689704/66‑1 (MQ=255) aGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATGCTTgcg < 1:25984997/68‑1 (MQ=255) aGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATGCTTgcg < 1:26771860/68‑1 (MQ=255) | TTCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGCCATCGATAAACATATCCATGACGTTTTTGCGGACCTGAGTTGTCATGCTTGCG > CP009273/4549690‑4549824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |