New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4619007381 (1.080)3 (0.010) 3/84 NT 1.3% coding (1333/1668 nt) yjjK putative transporter subunit of ABC superfamily: ATP‑binding component
?CP009273 4619854 = 167 (0.630)coding (486/1668 nt) yjjK putative transporter subunit of ABC superfamily: ATP‑binding component
Rejected: Frequency below/above cutoff threshold.

Only 100 of 382 total aligned reads displayed.

GCAGCATGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTC  >  CP009273/4619787‑4619920
                                                                   |                                                                  
gcagcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAgg                                                                    >  1:23457412/1‑68 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCGGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGtt                                                                  >  1:7390897/1‑68 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAgg                                                                    <  1:7915216/66‑1 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAgg                                                                    <  1:17688304/66‑1 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGtt                                                                  >  1:3790195/1‑68 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGtt                                                                  >  1:16162692/1‑68 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGtt                                                                  >  1:26677543/1‑68 (MQ=255)
  agcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGt                                                                   <  1:864860/67‑1 (MQ=255)
   gcaTGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTa                                                                 >  1:22990242/1‑68 (MQ=255)
    caTGACTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCAACGGAGAGGTTa                                                                 >  1:18575787/1‑67 (MQ=255)
      tGTCTGGTTTTTCCTGCAGCAGGCGGCTCAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCg                                                              <  1:10931280/68‑1 (MQ=255)
        tCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGag                                                            >  1:24128167/1‑67 (MQ=255)
          tGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGAttt                                                          >  1:27465888/1‑68 (MQ=255)
             tttttCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTc                                                        >  1:20889476/1‑67 (MQ=255)
             tttttCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTc                                                        >  1:12433621/1‑67 (MQ=255)
              ttttCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTcgc                                                      >  1:28080953/1‑68 (MQ=255)
                  cctgcagcagcttcgccagatgcagacgaccgcgctcaccaccggagagGTGAGCGAGTGTCGGGTc                                                   >  1:1359394‑M2/50‑67 (MQ=255)
                       agcagGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGt                                              <  1:17911693/67‑1 (MQ=255)
                       agcagGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGt                                              >  1:14766182/1‑67 (MQ=255)
                       agcagGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGt                                              >  1:18427605/1‑67 (MQ=255)
                         cagcttcgccagatgcagacgaccgcgctcaccaccggagagGt                                                                   >  1:14209163‑M2/43‑44 (MQ=255)
                          agGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTcc                                            <  1:23754724/66‑1 (MQ=255)
                            gcggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCa                                        >  1:28527570/1‑68 (MQ=255)
                             cggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCgg                                          <  1:14410326/65‑1 (MQ=255)
                             cggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCgg                                          <  1:8799094/65‑1 (MQ=255)
                             cggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCgg                                          <  1:13989491/65‑1 (MQ=255)
                              ggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGa                                      <  1:27785207/68‑1 (MQ=255)
                              ggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGa                                      <  1:4329747/68‑1 (MQ=255)
                              ggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGa                                      <  1:12753443/68‑1 (MQ=255)
                              ggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGa                                      <  1:7703639/68‑1 (MQ=255)
                              ggcACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGa                                      <  1:22247707/68‑1 (MQ=255)
                                cacaACGCTACGCGACGCCGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACg                                    >  1:23963375/1‑68 (MQ=255)
                                cacaACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGAc                                     <  1:3633103/67‑1 (MQ=255)
                                cacaACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGAc                                     <  1:15460380/67‑1 (MQ=255)
                                 acaACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGt                                   >  1:1584038/1‑68 (MQ=255)
                                  caACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTa                                  >  1:22599669/1‑68 (MQ=255)
                                  caACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTa                                  <  1:10801438/68‑1 (MQ=255)
                                    aCGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAgc                                <  1:3835622/68‑1 (MQ=255)
                                      gCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAgcgc                              >  1:20572650/1‑68 (MQ=255)
                                      gCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAgcgc                              >  1:12071284/1‑68 (MQ=255)
                                      gCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAgcgc                              >  1:22115572/1‑68 (MQ=255)
                                        tACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCAt                            <  1:15297775/68‑1 (MQ=255)
                                         aCGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCAt                            >  1:24842419/1‑67 (MQ=255)
                                         aCGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCAt                            >  1:12605724/1‑67 (MQ=255)
                                          cgcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          <  1:15000877/68‑1 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:2979096/1‑67 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:25263024/1‑67 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:4141872/1‑67 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:9553472/1‑67 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:9739902/1‑67 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:16812103/1‑67 (MQ=255)
                                           gcgACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATcc                          >  1:13259995/1‑67 (MQ=255)
                                            cgacgaCGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATccg                         >  1:8120690/1‑67 (MQ=255)
                                             gacgacGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATccgcc                       >  1:25937086/1‑68 (MQ=255)
                                             gacgacGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATccgc                        <  1:21568923/67‑1 (MQ=255)
                                              acgacgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATccgcc                       >  1:16631369/1‑67 (MQ=255)
                                              acgacgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATccgcc                       >  1:25634806/1‑67 (MQ=255)
                                               cgacgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCcgccgc                     <  1:4022588/68‑1 (MQ=255)
                                                  cggtcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACg                  <  1:23134303‑M2/51‑1 (MQ=255)
                                                  cgatcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACg                  <  1:19775763‑M2/51‑1 (MQ=255)
                                                  cgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACg                  <  1:11548970/68‑1 (MQ=255)
                                                  cgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACg                  <  1:23289573/68‑1 (MQ=255)
                                                  cgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACg                  <  1:20721170/68‑1 (MQ=255)
                                                  cgTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACg                  <  1:19604106/68‑1 (MQ=255)
                                                     tcacccccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:6974671‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGGCGCACGCt                <  1:8564543‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGGACGCt                <  1:6367669‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:8977255‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:26240059‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:26334751‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:19244056‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:19943532‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:6772061‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:4634330‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:20196260‑M2/53‑1 (MQ=255)
                                                     tcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:13780313‑M2/53‑1 (MQ=255)
                                                     gcaccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCt                <  1:11230792‑M2/53‑1 (MQ=255)
                                                       accaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCa             <  1:16880829‑M2/56‑1 (MQ=255)
                                                        ccaccggggagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAg            <  1:27200117‑M2/57‑1 (MQ=255)
                                                        ccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCa             >  1:18060234‑M2/12‑67 (MQ=255)
                                                        ccaccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAg            <  1:11920947‑M2/57‑1 (MQ=255)
                                                         caccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGc           <  1:8426868‑M2/58‑1 (MQ=255)
                                                         caccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGc           <  1:11968113‑M2/58‑1 (MQ=255)
                                                         caccggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGc           <  1:19006945‑M2/58‑1 (MQ=255)
                                                          accggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCa             >  1:24669940‑M2/10‑65 (MQ=255)
                                                          accggagagGTTAGCGATTTTCGCGTACCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCa             >  1:10013252‑M2/10‑65 (MQ=255)
                                                             ggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGt        >  1:21859123‑M2/7‑67 (MQ=255)
                                                             ggagagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTa       <  1:1027660‑M2/62‑1 (MQ=255)
                                                               agagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTAc      <  1:18709901‑M2/63‑1 (MQ=255)
                                                               agagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTAc      <  1:24639542‑M2/63‑1 (MQ=255)
                                                               agagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACg     >  1:5022203‑M2/5‑68 (MQ=255)
                                                               agagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACg     >  1:28163141‑M2/5‑68 (MQ=255)
                                                               agagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACg     >  1:2440922‑M2/5‑68 (MQ=255)
                                                                gagGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACg     <  1:1509000‑M2/64‑1 (MQ=255)
                                                                 agGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGt    >  1:26877533‑M2/3‑67 (MQ=255)
                                                                  gGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTGCGTTc  >  1:5350836‑M2/2‑68 (MQ=255)
                                                                  gGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGt    <  1:28347963‑M2/65‑1 (MQ=255)
                                                                  gGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTc  >  1:6011277‑M2/2‑68 (MQ=255)
                                                                  gGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTc  >  1:17424137‑M2/2‑68 (MQ=255)
                                                                  gGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTc  >  1:10150594‑M2/2‑68 (MQ=255)
                                                                   |                                                                  
GCAGCATGTCTGGTTTTTCCAGCAGCAGGCGGCACAACGCTACGCGACGACGTTCACCACCGGAGAGGTTAGCGATTTTCGCGTCCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTC  >  CP009273/4619787‑4619920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.