| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,546,448 | C→A | 8.0% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,546,448 | 0 | C | A | 8.0% | 1335.4 / 12.0 | 451 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (172/229); new base A (48/2); total (220/231) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.35e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 456 total aligned reads displayed.
GATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCG > CP009273/1546381‑1546515 | gCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAAt > 1:11576773/1‑68 (MQ=25) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:10802181/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:20003323/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:8430315/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:784535/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:27166467/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATg > 1:6187186/1‑67 (MQ=25) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:22715677/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:18160135/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:16333173/66‑1 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:11236474/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:15324701/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:28205953/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:23175971/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:25701479/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:28572655/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGgc > 1:2404250/1‑64 (MQ=25) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:17462173/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:27972431/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:9650799/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTAGCGTTTCTCATCACTTTCAAATTGCGCTGt > 1:740849/1‑68 (MQ=14) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaaa > 1:17741334/1‑55 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa > 1:15729734/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa > 1:5013527/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTaaaa > 1:13550636/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTaaaa > 1:3003038/1‑68 (MQ=255) tAGGCCTGATAAGCGTAACGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa > 1:5540984/1‑68 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAg > 1:389195/1‑67 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc > 1:3431339/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGct > 1:13834535/1‑67 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc < 1:537750/67‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc < 1:25233912/67‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:10051399/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:24946710/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:323324/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:7668497/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:13004436/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:11895355/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCg > 1:12010303/1‑68 (MQ=255) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa < 1:9392168/68‑1 (MQ=255) gATAAGCGTAGAGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa < 1:10615180/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCTAATGGCGCTGTAAAAGGCGTCAtt < 1:17185672/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:5179969/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:7108923/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:27318491/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:23826713/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:10271597/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:11379921/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:22106243/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:21405615/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAt < 1:4241584/67‑1 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt < 1:15995686/68‑1 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt < 1:26936126/68‑1 (MQ=255) gCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTc > 1:26234663/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:22894467/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:14331954/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:6493984/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:16622704/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:21248785/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:4470501/1‑68 (MQ=255) agtgcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:15116888/65‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:23751340/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:8871519/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:8700983/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:12920089/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:1446382/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:5954384/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:24664188/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:16196036/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:18719795/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:21154892/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:28839221/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:3538938/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt > 1:27544236/1‑68 (MQ=255) aTCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTa < 1:8149498/67‑1 (MQ=255) aGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTCTAAAAGGCGTCAAATACAAATTGTAGaaa > 1:18537154/1‑66 (MQ=18) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:2973893/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:15503272/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:19175084/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:20646698/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:3703671/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg > 1:22283749/1‑68 (MQ=255) aaTGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg < 1:19640525/67‑1 (MQ=255) aaTGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACg < 1:204510/67‑1 (MQ=255) ttGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg > 1:13378415/1‑66 (MQ=255) ttGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAg > 1:6696949/1‑66 (MQ=255) tGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGc < 1:24832875/67‑1 (MQ=255) gCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCtt > 1:26580346/1‑68 (MQ=255) gTTTGTCATAAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTg < 1:12645512/68‑1 (MQ=255) ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:1738687/46‑1 (MQ=255) ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt < 1:24379827/67‑1 (MQ=255) ttGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGt < 1:25568937/67‑1 (MQ=255) tcatcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTAATATTGTAGACAACGTAGGCTTTGTTCAt > 1:27717568/1‑68 (MQ=255) atcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGc < 1:29133731/68‑1 (MQ=255) tcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc > 1:28752846/1‑68 (MQ=255) tcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc > 1:12262655/1‑68 (MQ=255) tcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc > 1:9531032/1‑68 (MQ=255) aGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCgg > 1:17071517/1‑68 (MQ=255) gTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGa > 1:9118236/1‑68 (MQ=255) tttCAAATGGCGCTGTAAAAGGCGGCATTTTCATATTGTAGACAACGTAgg < 1:4770781/51‑1 (MQ=255) | GATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCG > CP009273/1546381‑1546515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |