| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,158 | A→C | 14.4% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,158 | 0 | A | C | 14.4% | 489.5 / 20.9 | 274 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (132/96); new base C (35/9); total (167/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 287 total aligned reads displayed.
AGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGC > CP009273/1703091‑1703224 | aGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa > 1:18143838/1‑68 (MQ=255)aGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa > 1:12549593/1‑68 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTCGACGCGGCTATTGCCCgcgc > 1:1432404/1‑68 (MQ=14) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:27847057/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:27707448/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:8379601/1‑67 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:18301501/65‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:3064021/67‑1 (MQ=255) atAATTCCGACCCAGAAAAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:6832452/64‑1 (MQ=11) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCCGCCGCTATTGCCCGCGCCAAAg > 1:8131705/1‑67 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAgc > 1:9867164/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCACAgc > 1:435775/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:7036314/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:3042148/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:28331131/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:19708748/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAgc > 1:10595588/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTATTGCCCGAGCCAACgc > 1:6202668/1‑68 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAgc > 1:24795154/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGACGCCGCTATTGCCCGCGCCAAAgc > 1:26907971/1‑68 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:23179655/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCaaacg > 1:26187365/1‑65 (MQ=14) accAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa > 1:9219958/2‑68 (MQ=18) accAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa > 1:27948983/2‑68 (MQ=18) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:2667212/1‑68 (MQ=25) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGCCCGCaa > 1:1646839/1‑68 (MQ=255) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:19397560/1‑68 (MQ=35) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:23817937/1‑68 (MQ=35) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:9578098/1‑68 (MQ=35) cAGAACAAGAGGCCGATCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:9833264/68‑1 (MQ=11) cAGAACAACTGGGCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:15185432/68‑1 (MQ=11) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:17598680/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:12866124/66‑1 (MQ=35) cAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:10006808/68‑1 (MQ=255) aaGAACAAGTTGTTGATCCTCGCAAATCTGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:218566/67‑1 (MQ=11) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACggg > 1:5320216/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:16656909/1‑68 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGa > 1:3556947/1‑67 (MQ=14) aacaGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAGGCGCGAAAACGGGa > 1:27373892/1‑67 (MQ=14) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCAGCAACCGGGAAc > 1:24157138/1‑68 (MQ=14) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGACCa > 1:23752992/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:24946949/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGACCa > 1:13023226/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAGGCCCGCAAAGGGGAACa > 1:20762585/1‑67 (MQ=14) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAACCAGGAACAGCa > 1:15457694/1‑68 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACGGGAACa < 1:18575920/64‑1 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:10184948/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:22204013/1‑67 (MQ=255) tCCTCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:7788405/68‑1 (MQ=255) tCCTCGAAAACCTGCCGTAGAAGCCGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:28157464/68‑1 (MQ=17) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:4996243/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:17402358/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:11920/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:13324709/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:20327285/68‑1 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGCACAGCACCCg > 1:746040/1‑66 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:6518927/1‑66 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt > 1:26274244/1‑68 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt > 1:27654957/1‑68 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:18040321/1‑68 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCGCGCAACCGCGACCAGCAACAGGCTAAt > 1:23325206/1‑68 (MQ=11) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:10692892/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:3842294/1‑68 (MQ=255) cgccgTGGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:17277685/68‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:3786770/68‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:21071135/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:8676270/67‑1 (MQ=255) cgTCGAAGCAGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:20439093/67‑1 (MQ=255) cgTAGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:10926357/67‑1 (MQ=255) gTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCaga < 1:28990505/68‑1 (MQ=255) gTCGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCaga < 1:29026553/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:9604164/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:5102664/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa < 1:10407914/67‑1 (MQ=255) gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:16765391/68‑1 (MQ=255) gAAGCAGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:16241550/68‑1 (MQ=255) aaGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga > 1:13537943/1‑67 (MQ=255) aGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAgaagaa < 1:5530613/67‑1 (MQ=255) gCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACa > 1:11139833/1‑68 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGTCAGAAGAACAg > 1:29197619/1‑68 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:3193938/1‑68 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:22316299/1‑68 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:25862486/1‑68 (MQ=255) cggtATTGCGGGAGCGAATGCGTGCAAAAGCGAAATGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:22020397/64‑1 (MQ=12) cGCTATTGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:9084389/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:16050227/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:19143493/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:25326533/67‑1 (MQ=255) agCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:25967376/66‑1 (MQ=255) tATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTg > 1:14969154/1‑68 (MQ=255) aTTGCCCGCGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGa < 1:4530509/68‑1 (MQ=255) aTTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGa > 1:14793012/1‑68 (MQ=255) ttGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGa > 1:11342562/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:23539460/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:24235747/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGAAACCGGCTAATGAGGAGCCAGAAGAACAGGTTGATcc > 1:6057542/1‑67 (MQ=18) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:4228178/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:13849122/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:22606116/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:5732473/1‑68 (MQ=255) | AGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGC > CP009273/1703091‑1703224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |