| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,251 | A→C | 6.2% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,251 | 0 | A | C | 6.2% | 892.9 / 7.0 | 317 | A692A (GCA→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (102/191); new base C (4/20); total (106/211) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.57e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 326 total aligned reads displayed.
ACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGC > CP009273/1703185‑1703318 | ggCTAATGCGGAGCCAGAAGATCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:5035641/68‑1 (MQ=255) gCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg > 1:16469785/1‑67 (MQ=255) gCTAATGCGGAACCAGAAGAACAGTTTTATCCGCTAAAACCAGCCCACGAACCAGCTATTGCACgcgc > 1:4415946/1‑68 (MQ=9) cTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:18602684/66‑1 (MQ=255) cTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGcc > 1:2605124/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:14841528/1‑68 (MQ=255) gCGGACCCAGAACAACAGGGTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc < 1:14941665/68‑1 (MQ=17) gCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:16214821/1‑68 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGc > 1:21051713/1‑67 (MQ=255) gCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCa > 1:362858/1‑68 (MQ=255) cataagaaCATGTAGATCCTCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:25406630/65‑1 (MQ=17) cAGAATAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:15781127/68‑1 (MQ=255) cAGAAGAACATGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:1694550/68‑1 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:18314034/68‑1 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:15584698/68‑1 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:973457/68‑1 (MQ=255) cAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:26710908/68‑1 (MQ=255) gaagaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt < 1:26521545/68‑1 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCttg > 1:4278834/1‑66 (MQ=255) gaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:20184959/1‑67 (MQ=255) gaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa > 1:28579463/1‑68 (MQ=255) caCAGGTTGATCCGCGCAAATCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa < 1:20296803/67‑1 (MQ=255) aaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa > 1:616465/1‑67 (MQ=255) aaCAGGGTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa < 1:19918230/68‑1 (MQ=255) aaCAGGCTGATCCTCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa < 1:20941947/68‑1 (MQ=255) aaCAGGCTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa < 1:11348102/68‑1 (MQ=255) actggTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa < 1:7719702/64‑1 (MQ=255) aGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa > 1:12715800/1‑67 (MQ=255) gTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:4857564/57‑1 (MQ=255) ttGATCCTCGCAAAGCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGc < 1:21370479/66‑1 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:14269443/67‑1 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:2061616/1‑67 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:8595260/1‑67 (MQ=255) tGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAAc < 1:15487554/68‑1 (MQ=255) aTCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:22327703/1‑68 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:24743011/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:15412420/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCAGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:15317749/68‑1 (MQ=255) tCCGCGCAAAGCGGCCGGCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:4700238/68‑1 (MQ=11) tCCCCGCAAATCTGCCGTCGAAGCGGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg < 1:21640079/67‑1 (MQ=17) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:8987835/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:13323153/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:3051405/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:22202425/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:16019470/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:9570544/1‑66 (MQ=255) gcAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:1706412/1‑68 (MQ=255) gcAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt < 1:8685933/68‑1 (MQ=255) aatcTGCCGTGGAAGCCGCTATAGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGc < 1:11765801/64‑1 (MQ=11) aaGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCg < 1:13905884/68‑1 (MQ=255) tcTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:7126456/67‑1 (MQ=14) gCTGCCGTCGAAGCGGCTATTGCACGCTCCAAAGCACGCAAGCTGGATCAGCACCAGGCTAATGCGGt > 1:109282/1‑68 (MQ=18) gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:1291332/1‑68 (MQ=255) cTGCCGTGGAAGCCGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:3898891/68‑1 (MQ=14) cTGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:7474997/68‑1 (MQ=255) tGCCGTCGAAGCGGCTATTTCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:9287982/67‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:18960174/67‑1 (MQ=255) ggCCGTCGCAGCGGCTATTTCACGCGCCAAAGCCCGAAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:10049092/66‑1 (MQ=17) cgCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:29180269/65‑1 (MQ=255) cttCGAAGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:12392469/65‑1 (MQ=255) cGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:23044531/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:5464775/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:2489325/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:22033303/67‑1 (MQ=255) cGTCGAAGCAGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:5730185/67‑1 (MQ=255) gTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagg < 1:24375145/68‑2 (MQ=255) tCGATGCGGCTATTTCACGTGCAAAAGACCGATAGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:24127119/67‑1 (MQ=14) cGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:22636632/67‑1 (MQ=255) cGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:5904152/68‑1 (MQ=255) gAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:11166131/68‑1 (MQ=255) gAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:27677626/68‑1 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:14658796/1‑68 (MQ=255) tgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:12161174/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:16686510/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:24028069/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:11714329/66‑1 (MQ=255) gtttATTGCAAGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:19339330/64‑1 (MQ=255) ggCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:3352106/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:19572699/67‑1 (MQ=255) cgCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:17341502/66‑1 (MQ=255) cgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:14363530/66‑1 (MQ=255) cgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:26175027/66‑1 (MQ=255) cgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:7408860/66‑1 (MQ=255) agCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:105426/66‑1 (MQ=255) atagCACGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa < 1:2664792/65‑1 (MQ=255) aTTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa < 1:8100203/68‑1 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:13575531/1‑67 (MQ=255) gCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:22775439/1‑68 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:323106/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:29084789/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:27004635/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:1782970/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:25573725/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:23546352/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:1748930/1‑67 (MQ=255) aCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc < 1:5576281/68‑1 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:25127318/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:10870125/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:23353366/1‑68 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:17751438/1‑68 (MQ=255) | ACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGC > CP009273/1703185‑1703318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |