| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,466 | G→T | 15.5% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,466 | 0 | G | T | 15.5% | 525.2 / 12.7 | 212 | intergenic (+505/+109) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (113/57); new base T (15/17); total (133/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 212 total aligned reads displayed.
GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCC > CP009273/3263400‑3263532 | cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:9720370/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:3818126/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:20378148/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGa < 1:23902098/66‑1 (MQ=35) tcttCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg < 1:3431033/65‑1 (MQ=25) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:7092585/1‑68 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa < 1:14504606/68‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGTAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:15251956/1‑67 (MQ=25) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa > 1:25026251/1‑63 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:12503394/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:26319091/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:24845545/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:13954766/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:27934735/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:21516450/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:3102676/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:21022032/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:11977413/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:19411866/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:8822412/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:17882444/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:16154440/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAc < 1:10254499/68‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAACCAGGTGAAACTGa > 1:10099307/1‑67 (MQ=25) tcagtttcacctggtttacgtAAAAACCCGCCGGAGCGGGTTTTTACGTTAACCCGGGGGAactggcc < 1:19410996‑M1/47‑4 (MQ=255) tCTTTCTGGCCCTCCAAAATCACAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc < 1:11119237/68‑1 (MQ=11) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc < 1:12333380/68‑1 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc > 1:14795244/1‑68 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc > 1:20773730/1‑68 (MQ=35) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg < 1:14043162/68‑1 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAACCCAGGTGAAACTGACCGa > 1:25841054/1‑68 (MQ=25) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGAt > 1:11222056/1‑68 (MQ=35) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGAt > 1:22644036/1‑68 (MQ=35) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGAt > 1:22217163/1‑68 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:3980258/1‑67 (MQ=255) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:16901494/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:27768080/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:2469665/1‑67 (MQ=35) acctggtttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc < 1:26076924‑M1/55‑1 (MQ=255) ccTCCAAAAGCACAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGc < 1:11787361/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:21299754/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:7414777/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttcttt < 1:2739313/68‑1 (MQ=40) aaGCAAAAACCCGCCGAACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttcttt < 1:25083031/68‑1 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:5810788/1‑68 (MQ=40) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCtttt > 1:25664618/1‑68 (MQ=255) gtAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg < 1:20805215‑M1/66‑1 (MQ=255) cAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGATACTGACCGATACGCCGCTTTCGTTTgg > 1:14897045/1‑68 (MQ=11) ttAAACCCGCCGAATCGGGTTTTTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:13579627‑M1/3‑68 (MQ=255) atAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:22858583‑M1/3‑67 (MQ=255) taaaCCCGCCGTATCGGGTTTTTACGTACACCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:12030867/67‑1 (MQ=11) tAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:14253317‑M1/2‑68 (MQ=255) tAAACCCGCCGTACCGGGTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:28306034‑M1/2‑68 (MQ=255) cAAACCCGCCGTACCGGGTTATTACGTAAAGCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:9125742‑M1/2‑68 (MQ=255) cAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:26253296‑M1/2‑68 (MQ=255) cAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:17997057‑M1/2‑68 (MQ=255) cAAACCCGCCGAACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:13333646‑M1/2‑68 (MQ=255) AAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:9574790‑M1/1‑68 (MQ=255) AACCCGCCGTATCGGGTTTTTACGTACACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:8156019‑M1/1‑66 (MQ=255) AACCCGCCGTATCGGGTTTTTACGTAAACCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGtat > 1:17527471‑M1/1‑68 (MQ=255) AACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat < 1:15075993‑M1/68‑1 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 1:28380795‑M1/68‑1 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 1:19255694‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 1:27487789‑M1/67‑1 (MQ=255) CCGCCGCATCGGGTTTTTACGTAAACCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc > 1:17800417‑M1/1‑68 (MQ=255) CCGCCGAAGCGTGTTTTTACGTAAACCAGGTGATACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc > 1:253720‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGt > 1:7377208‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGt > 1:1065723‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTAGGGTAtaggc < 1:27827969‑M1/67‑3 (MQ=255) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTAGGGGATAGCg < 1:9048961‑M1/67‑1 (MQ=255) gAAGAGGGTTTTTACGTAAACCAGGTGACACTGACCTATAAGCCGCTTTCTTTTGGGTATAGcgtcgt < 1:8706218/68‑1 (MQ=14) gcgggtttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTgg > 1:27077420‑M2/11‑67 (MQ=255) acgggtttttACGTAAATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGa < 1:18618774‑M2/58‑1 (MQ=255) gggtttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACa > 1:20235886‑M2/9‑68 (MQ=255) tttttACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:26639179‑M2/62‑1 (MQ=255) tttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:25145218‑M2/62‑1 (MQ=255) tttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:22147002‑M2/62‑1 (MQ=255) tttttACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:621661‑M2/62‑1 (MQ=255) tttttACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:1662303‑M2/62‑1 (MQ=255) tttttACGTAAAACAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTc < 1:15837114‑M2/63‑1 (MQ=255) ttattACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGt < 1:442665‑M2/62‑1 (MQ=255) ttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTc < 1:26851204‑M2/63‑1 (MQ=255) ttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTc < 1:715066‑M2/63‑1 (MQ=255) tattACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCa < 1:28682162‑M2/64‑1 (MQ=255) gTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATc < 1:20695555/68‑1 (MQ=25) gTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtcattca > 1:28420509/1‑66 (MQ=40) gTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtcattaa > 1:7960956/1‑64 (MQ=255) aaaTCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCtt < 1:23480711/68‑1 (MQ=255) aaaTCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCt < 1:4657679/67‑1 (MQ=255) aaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATCtgt > 1:4803114/1‑66 (MQ=255) aaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGtcattcataat > 1:1275186/1‑64 (MQ=255) aCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCtt > 1:23208213/1‑66 (MQ=39) aCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGAAAGTCATTCATATTTc > 1:21884983/1‑68 (MQ=255) ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCattg > 1:28838012/1‑66 (MQ=255) ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCATTca > 1:9298499/1‑67 (MQ=255) ccAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAAAGCGTAGTCGACAGGCATTCATCtttgt > 1:9656015/1‑66 (MQ=11) cAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTAATCTTTCt > 1:4703201/1‑67 (MQ=25) ggTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcg > 1:4202437/1‑41 (MQ=35) tGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGTAAGACAATCATCGATCTGcccc > 1:24943395/1‑68 (MQ=11) tGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGcccc > 1:19036946/1‑68 (MQ=35) | GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCC > CP009273/3263400‑3263532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |