| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,579 | G→T | 11.6% | noncoding (373/377 nt) | rnpB ← | RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,579 | 0 | G | T | 11.6% | 832.4 / 12.8 | 286 | noncoding (373/377 nt) | rnpB | RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (127/116); new base T (20/18); total (149/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 297 total aligned reads displayed.
AGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263512‑3263645 | gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:22689046/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:19646445/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:19841977/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:18699022/66‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:8103195/66‑1 (MQ=35) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa > 1:15963263/1‑66 (MQ=35) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa > 1:2640636/1‑66 (MQ=35) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGCTTTTTACGTAAATCAGGTGaa > 1:3671693/1‑66 (MQ=25) ggtcagtttcacctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg < 1:3847307‑M1/44‑1 (MQ=255) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCTGGTTTTTACGTAAATCAGGTGAAACTGa < 1:14811628/68‑1 (MQ=25) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg > 1:14730147/1‑67 (MQ=35) atgtttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:5248845/4‑67 (MQ=25) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:16471914/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:16199623/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:8323138/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:17715824/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:17949798/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:1520091/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:26516145/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:8665861/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:1445656/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:21003448/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:7085432/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:4778179/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAc < 1:12913302/68‑1 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:13312370/1‑68 (MQ=35) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCg > 1:20164146/1‑68 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGa > 1:26945915/1‑68 (MQ=35) tCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATa < 1:4121638/68‑1 (MQ=35) ttcacctgatttacgtaaaaccccgcttcggcgggtttttACGTAAATCAGGTGAAACTGACCGa < 1:10276208‑M2/25‑1 (MQ=255) tcacctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa < 1:23196509‑M1/52‑1 (MQ=255) ggcccTCAAAAATCATAAACCCGCCGTACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:29108614/66‑1 (MQ=11) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:5659823/1‑67 (MQ=35) gcccTCAACAATCATAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGc < 1:27728404/66‑1 (MQ=11) acctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGGTaaggc < 1:27532789‑M1/55‑3 (MQ=255) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:16998762/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:330484/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:25083656/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:11672343/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:1207758/1‑68 (MQ=35) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:28307531/68‑1 (MQ=37) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:22305158/68‑1 (MQ=40) atgCAAATACCCTACGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:23322711/66‑1 (MQ=17) aatcAAAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:14327691/65‑1 (MQ=17) aatcAAAAACCCGCCGAATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:15320083/65‑1 (MQ=17) aaGCATAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:25640301/68‑1 (MQ=17) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:12536048/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:13609462/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:12012911/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:27070605/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:24245990/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:10978504/68‑1 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc > 1:1940790/1‑68 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc > 1:15046405/1‑68 (MQ=255) gtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg < 1:6062300‑M1/66‑1 (MQ=255) gtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg < 1:13687282‑M1/66‑1 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:11210572/1‑68 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:28727455‑M1/1‑66 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGt > 1:15067278‑M1/1‑67 (MQ=255) cAAACCCGCCGAAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTgg > 1:1061666‑M1/2‑68 (MQ=255) AAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGa > 1:17325849‑M1/1‑68 (MQ=255) ACCCGCCTAAGCGGGTTTTTACGTAAATCAGGTGAAACTTACCGATAAGCCGGGTTCTGTCGTGGACa > 1:1086108‑M1/1‑68 (MQ=255) ACCCGCCGCAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 1:27148‑M1/1‑68 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGCCCGATAAGCCGGGTTCTGTCTTGGACa < 1:10006852‑M1/68‑1 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:28613433‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGCTAAGCCGGGTTCTGTCGgggagag < 1:19905465‑M1/68‑4 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:15673088‑M1/68‑1 (MQ=255) CCGCCGTAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:24893782‑M1/1‑68 (MQ=255) CCGCCGTACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:11331371‑M1/1‑68 (MQ=255) CCGCCGTAACGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:25231117‑M1/1‑68 (MQ=255) CCGCCGCACCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:28489582‑M1/1‑68 (MQ=255) CCGCCGAAGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:8035755‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:23874292‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:4523201‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:3387567‑M1/1‑68 (MQ=255) CCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:18116346‑M1/1‑68 (MQ=255) ctccgACGCGGGTTTTTACTTAACTAAGTGCAAAATGACCTATTAGGCGTCTTCTGTCGTGGACAGtc < 1:9871567/66‑1 (MQ=255) CGCCGAAGCGGTTTATTACTTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:27362257‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:6424281‑M1/1‑68 (MQ=255) aGCGTGTTTTTACGTAAATCCGGGGATACTGCCCTATAAGACGGTTTGTGTCGTGGACAGtcattcat < 1:1573546/68‑1 (MQ=19) aGCGGGTTTTTACGTAAATCCGGTGAAACTGACCGATAATCCGGGTTCTGTCGTGGACAGtcattcat < 1:9462825/68‑1 (MQ=25) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:2451476/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:6680831/68‑1 (MQ=255) gTTTTTACGTTAATCACGTTAAACTGACCTATTTTCCGTTTTCTGTCGTGGACAGTCATTCATCTAgg < 1:25922978/68‑1 (MQ=16) tttttACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg < 1:1486344‑M2/62‑1 (MQ=255) tttttACGTAAATCACGTGAACCTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg < 1:7577229‑M2/62‑1 (MQ=255) ttattACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGGCGGGGACAGTCATTCATCTAGGc < 1:7146117‑M2/63‑1 (MQ=255) aCGTACATCAGGTAAAACTGACCGATAAGCCGCGTTCTGTGGTGGAGAGTCAATAATCTAGTCCAGCa > 1:20299272/1‑68 (MQ=14) aCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:22122279/1‑68 (MQ=255) gTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:8845998/68‑1 (MQ=255) gTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCaa > 1:2191423/1‑67 (MQ=255) gTAAAGCAGGTGAAACTGACATATAAGCCGTGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:19049234/68‑1 (MQ=37) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:4390934/1‑68 (MQ=255) cAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:23629530/68‑1 (MQ=255) ggTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:22956350/1‑65 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:22414556/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:23025999/1‑67 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:3127394/67‑1 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:13117668/67‑1 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:27562654/67‑1 (MQ=255) | AGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263512‑3263645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |