| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,774,505 | C→G | 9.9% | intergenic (+128/‑70) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,774,505 | 0 | C | G | 9.9% | 1587.0 / 34.2 | 478 | intergenic (+128/‑70) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (378/45); new base G (2/53); total (380/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.84e-40 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 496 total aligned reads displayed.
ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGC > CP009273/3774438‑3774571 | atgtaCTCCCTCACTCAGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc > 1:4605335/1‑68 (MQ=255) gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgg > 1:10050202/1‑68 (MQ=255) gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgg < 1:7668305/68‑1 (MQ=255) taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 1:2297274/1‑68 (MQ=255) taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 1:25441827/1‑68 (MQ=255) ctcactcaCTCTGAAACGACACCGCACTCTTTTTTTATCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:28851707/1‑68 (MQ=38) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:17476889/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:10126583/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:19408876/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:20366643/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:21287762/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:21740054/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:22453541/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:23425123/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:23729456/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:24507437/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:25080085/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:2622659/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:26567273/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:27602325/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:27956337/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:28356633/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:3196419/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:3696345/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:5820970/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:9433213/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:9575251/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:1512222/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:13566811/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCAGGGAGAGGGCCGGGGt > 1:8659453/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg > 1:17822877/1‑68 (MQ=255) tCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg > 1:5980108/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa < 1:25231042/68‑1 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:18295992/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:5283098/1‑68 (MQ=255) cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg < 1:15390941/68‑1 (MQ=255) cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg < 1:23952946/68‑1 (MQ=255) cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg < 1:28992477/68‑1 (MQ=255) aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa > 1:7911791/1‑68 (MQ=255) aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa > 1:25672245/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:3394993/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:8166476/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:15896868/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:27377058/1‑68 (MQ=255) aaaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCAGGGAGAGGGCCGGGGTGAGGGGAAAAgg > 1:7346806/1‑67 (MQ=255) aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:6703932/1‑68 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:26105831/1‑67 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:6131843/1‑67 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:14009130/1‑67 (MQ=255) aCGACACCGCACTCTTTTTTTCTACCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:1575941/1‑67 (MQ=255) gACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGc > 1:20832139/1‑67 (MQ=255) cacCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGc > 1:28654612/1‑65 (MQ=255) cacCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGc > 1:11592360/1‑65 (MQ=255) ccccACTTTTTTTTCCGCCCCCCCCCCTCGGGGCAGCGGGCGGGGGTGAGGGTAAAAGGCCGCACTGc < 1:14372112/65‑1 (MQ=255) ccccACTCTTTTTTGCCCCCGCCCCCCGCGGGGGAGTGGGCGGGGTTGGGGGTAAAAGGCCGCACTGc < 1:20080089/65‑1 (MQ=255) cttttttttcCCCCCCCCCCCCCCCGGGGGGGGGGCCGGGGGGCGGGCACAAGGCCGCACTGCTCAcc < 1:14859930/65‑1 (MQ=255) ttttttgCCCCCCCCCCCCGGGGGGGTGGGGGGGGGGGGGGGGGCACAAGGCCGCACTGCTCACCAAt < 1:10663945/68‑1 (MQ=255) ttttttcCCCCCCCCCCCCGCGGGGGAGGGGGGGGGTGGGTGGGGCCACGGCCGCACTGCTCACCAAt < 1:24393103/68‑1 (MQ=255) ttttttcCCCCCACCCCCCGCCGGGGCGCGGGCCGGGGGGAGGGGACAAGGCCGCACTGCTCACCAAt < 1:11827789/68‑1 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:11939101/1‑66 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:29251195/1‑66 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:9026133/1‑66 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:19064392/1‑66 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:12619193/1‑66 (MQ=255) ttCTCCCCCCCCCCGCGGGGGTGTGGGCGGGGGGGCGGGCAAAAGGCCGCACTGCTCACCAATTTTCt < 1:18093546/68‑1 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:1722831/1‑67 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:16144572/1‑67 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:16333600/1‑67 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:16808292/1‑67 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:12819015/1‑67 (MQ=255) cccTCGGGGGGGCGGGGGGGGGGGCGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc < 1:21966735/68‑1 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCCCCAATTTTCTGCTATCCTGc > 1:7094929/1‑67 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:18656982/1‑67 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:26762971/1‑67 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:8920580/1‑67 (MQ=255) cccGCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc < 1:21081932/68‑1 (MQ=255) gggggAGCGGGCCGGGGTGCGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc < 1:13321542/67‑1 (MQ=255) cggggcggggGCGGGGGTGCGGTGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc < 1:17365452/68‑1 (MQ=255) ggAGTGGGCGGGGGGCCGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc < 1:9788357/67‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 1:1024531/1‑68 (MQ=255) ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 1:22687818/1‑68 (MQ=255) ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 1:6486091/1‑68 (MQ=255) tgggggCGGGGGTGCGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 1:26463410/64‑1 (MQ=255) cgggggCGGGGGGGGGGGTACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 1:24806049/64‑1 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:24213177/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:185581/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:19616279/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:21482836/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:4213248/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:6298646/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:13661265/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:11332587/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCAGCCCCCCCACTaa > 1:24947950/1‑68 (MQ=255) agagGGCCGGGGTGACGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:4951559/1‑68 (MQ=255) gtgggCGGGGGTGCGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 1:8420939/66‑1 (MQ=255) gtgggCGGGGGGGAGGGCACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa < 1:2233925/65‑1 (MQ=255) gtgggCGGGGGCGCGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 1:12318275/66‑1 (MQ=255) gggCGGGGGGGTGGGCACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg < 1:16946080/67‑1 (MQ=255) gCCGGGGTGCGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg < 1:13132461/67‑1 (MQ=255) gCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg > 1:10995142/1‑67 (MQ=255) | ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGC > CP009273/3774438‑3774571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |