| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 284,986 | A→C | 11.3% | intergenic (‑113/+26) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 284,986 | 0 | A | C | 11.3% | 509.7 / 4.7 | 167 | intergenic (‑113/+26) | yagI/argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| Reads supporting (aligned to +/- strand): ref base A (135/6); new base C (3/15); total (138/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.67e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 167 total aligned reads displayed.
GGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTA > CP009273/284923‑285051 | ggATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑c > 1:9184095/1‑68 (MQ=255) gATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑c > 1:26844825/1‑67 (MQ=255) aaaTCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAAc > 1:17729473/1‑67 (MQ=255) aaaTCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAAc > 1:26090692/1‑67 (MQ=255) aTCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CAAAAAcgc > 1:5653256/1‑67 (MQ=255) aaTGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGA‑GGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGAcc < 1:3429026/68‑1 (MQ=255) aTGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGAc > 1:12374173/1‑67 (MQ=255) ggAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCa > 1:9802201/1‑68 (MQ=255) ggAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCa > 1:4819560/1‑68 (MQ=255) aGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGCGGG‑CACCCACCCGCAGCGGACCGaa > 1:22207909/1‑67 (MQ=18) gCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATc > 1:26361478/1‑68 (MQ=255) gCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATc > 1:21314982/1‑68 (MQ=255) ccGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATc > 1:1367375/1‑67 (MQ=255) ccGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATc > 1:21093139/1‑67 (MQ=255) cGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATc > 1:15101558/1‑66 (MQ=255) gtgtTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑TACCAACGCGCAGCGGACCCAATCACt > 1:18039040/1‑67 (MQ=255) gtgtTCACCCGCCCCGTGGGGTCGTGGGCGGGG‑GTGCGGC‑CACCAACGCGCAGCGGACCCAATCACt < 1:18693097/67‑1 (MQ=255) gtgtCCCCCCTCCCCGGGGGGGAGGGGGCGGGG‑GGGCGGC‑CACCAACGCGCAGCGGACCCAATCACt < 1:28782200/67‑1 (MQ=255) tgtTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTc > 1:7528002/1‑67 (MQ=255) ttCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTcccc > 1:27503070/1‑68 (MQ=255) ccctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGCCCCAATCCCTCCCCAAGc > 1:28047584/1‑68 (MQ=255) ccctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGc > 1:2267049/1‑68 (MQ=255) ccctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGc > 1:15807458/1‑68 (MQ=255) ccctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGc > 1:1385127/1‑68 (MQ=255) ccctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGc > 1:11335219/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCACTCACTCCCCAAGCGt > 1:24864452/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:14009834/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:15517803/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:9666471/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:10382083/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:17706092/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:6435185/1‑68 (MQ=255) ctctccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGt > 1:1280725/1‑68 (MQ=255) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCCGCGGCCCCAATCACTCCCCACGCGGTg > 1:6915096/1‑67 (MQ=21) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCCGCGGACCCAATCACTCCCCAAGCGTTg > 1:18097050/1‑67 (MQ=255) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTg > 1:8049289/1‑67 (MQ=255) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTg > 1:10120097/1‑67 (MQ=255) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTg > 1:14077662/1‑67 (MQ=255) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTg > 1:2082720/1‑67 (MQ=255) tccctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCCTTg > 1:19925065/1‑67 (MQ=255) cctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGAcc < 1:4237563/45‑1 (MQ=255) cctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCCCTCCCCAAGCGTTGCca > 1:13603508/1‑68 (MQ=255) cctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCca > 1:23174184/1‑68 (MQ=255) cctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCca > 1:10736490/1‑68 (MQ=255) cctGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCca > 1:19837475/1‑68 (MQ=255) cctGTGGGAGAGGGCCGGG‑GTGACGG‑CACCAACGCGCAGCGGGCCCATTCACTCCCCAAGCGATGCca > 1:24071939/1‑68 (MQ=25) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:21125832/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:28394966/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:14782845/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:356218/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:27282898/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:11155490/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:4874968/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:8293737/1‑67 (MQ=255) tgGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCcatca > 1:15942164/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGCCCCAATCACTCCCCAAGCGTTGCCatcatc > 1:872657/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCCCTCCCCAAGCATTGCcctcata > 1:6378713/1‑66 (MQ=37) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:7266686/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:4594541/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:23148914/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:24732918/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:9050423/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:18202770/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:18269116/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:8942406/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:14211531/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:22303489/1‑67 (MQ=255) ggAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCatcatc > 1:26176619/1‑67 (MQ=255) gagaGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCAtcatca > 1:4980811/1‑67 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:19510860/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:18466264/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:740456/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:11333498/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:10640570/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:1817961/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:8968452/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:17775756/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:161708/1‑68 (MQ=255) agagGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCAcc > 1:15115342/1‑68 (MQ=255) agGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCg > 1:10230550/1‑67 (MQ=255) agGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCg > 1:25956579/1‑67 (MQ=255) gggCGGGG‑GGGCGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGcc < 1:5383686/68‑1 (MQ=255) ggCGGGG‑GTGGGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGcc < 1:9535034/67‑1 (MQ=255) ggCGGGG‑GTGCGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGcc < 1:16297547/67‑1 (MQ=255) ggCGGGG‑GTGCGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGcc < 1:26644292/67‑1 (MQ=255) ggCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCca < 1:163334/56‑1 (MQ=255) gggggg‑gTGGGGGCCACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGcc < 1:9546520/64‑1 (MQ=255) gCCGGGCGTCAGGC‑CCCCATCGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGcc < 1:8934826/67‑1 (MQ=255) gCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCtt > 1:17271524/1‑68 (MQ=255) ggg‑gTGTGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTaa < 1:18697993/67‑1 (MQ=255) ggg‑gTGCGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTaa < 1:9419062/67‑1 (MQ=255) gg‑gTGTGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAAt < 1:15067433/67‑1 (MQ=255) gg‑gTGCGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAAt < 1:23805159/67‑1 (MQ=255) gg‑gTGCGGC‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAAt < 1:28663249/67‑1 (MQ=255) g‑gTGAGGG‑CACCAACGCGCAGCGGACCGAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCg > 1:5077361/1‑68 (MQ=255) g‑gTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCCCCGCCTTAATCg > 1:2638463/1‑68 (MQ=255) g‑gTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCg > 1:14868008/1‑68 (MQ=255) g‑gTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCg > 1:28799887/1‑68 (MQ=255) gTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGGCTTAATCGt > 1:11587324/1‑68 (MQ=255) tGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCATTAATCGTa > 1:13128398/1‑68 (MQ=255) | GGATGAAAAATCAATGAAATGGAGCCGGTGTTCTCCCTCTCCCTGTGGGAGAGGGCCGGG‑GTGAGGG‑CACCAACGCGCAGCGGACCCAATCACTCCCCAAGCGTTGCCATCATCACCGCCTTAATCGTA > CP009273/284923‑285051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |