New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4230085 =	NA (NA)	12 (0.030)	8/98	NT	NA	noncoding (1/37 nt)	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	CP009273	4230118 =	NA (NA)					noncoding (34/37 nt)	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4230158‑4230085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  CP009273/4230118‑4230184                                                                                                                                               TGGAGCGCGCCTCCACCACAGCCGGATATACCTACCCGGAGGCCGGATAAGCCGCGCCTGGCGGCGCA                                                                           <  1:27781747/68‑1 TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA                                                                           <  1:25697657/68‑1 TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA                                                                           <  1:2562237/68‑1  GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          <  1:6770102/68‑1  GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          <  1:1181359/68‑1  GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA                                                                           >  1:11834446/1‑67  GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCA                                                                           >  1:14345690/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGGTAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:19891793/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:3655062/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:26573481/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:28201108/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:20583556/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:20610256/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:30566035/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:30969250/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:31279179/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:34395636/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:13943572/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:20838872/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:1298374/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:1152674/1‑67   GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:5394608/1‑67    AGCGCTCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:25175904/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGGATCC                                                                        >  1:22023450/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:30631152/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:2440278/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:22939683/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:22554604/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:26091010/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:28436060/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:29142191/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:29606128/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:8608772/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:33024573/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:3918954/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:4745206/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:5027105/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:7189428/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:860732/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:21559069/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:11446711/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:15554223/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:15631001/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:17701345/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:18007922/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:18988375/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:19781983/1‑68    AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:21800576/1‑68     GCGCGCCTCCACCAACGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:12802679/68‑1     GCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       >  1:27836805/1‑68       GCGCCTCCACCAAAGCCGGATATACCTCCCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:15012960/66‑1       GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:25592945/66‑1       GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:24428057/66‑1       GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:21517863/66‑1       GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:19583080/66‑1       GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:28064132/66‑1       GCGCCTCCACCAAAGCCGGATATACCTACCCGTACGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC                                                                     <  1:33076631/68‑1             CCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGG                                                               <  1:33665481/68‑1              CACCACAGCCGGATATACCTACCCGTAGGCCGGCTAAGCCGCGCCGGGCGGCGCAGCCGGCCTACGGG                                                              <  1:23426879/68‑1              CACCAACGCCGGATATACCTACCCGTAGGCCGGATAACCCGCGCCTGGCGGCGCATCCGGCCTACGG                                                               <  1:19534607/67‑1                  AAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGG                                                          <  1:32427162/68‑1                       CGGATATCCCTACCCGGCGGCCGGATAAGCCGCGCCTGGCGGCGCAGCCGGCCTACGGGTAGGTAT                                                       <  1:14450154/66‑1                           TATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGG                                                 <  1:23472383/68‑1                            atcCCTCCCCGACGGCCGGATAACCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGC                                                <  1:7037347/65‑1                             TACCTACCCGTCGGCCGGATAAGCCGCGCCTGGCGGCGCACCCGGCCTACGGGTAGGTATATCCGGCT                                               <  1:11224243/68‑1                                ctcCCCGTCGGCCGGATACGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCTTTG                                            <  1:11027208/65‑1                                CTACCCGTCGGCCGGATACGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCTTTG                                            <  1:16565050/68‑1                                CTACCCGTCGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCTTTG                                            <  1:4529781/68‑1                                 TACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCTTTGG                                           <  1:4438678/68‑1                                                                 ctaATCCGTCCTACGGGTAGGTATATCCGGCTTTGGTGGTGGCGCGCTCCAAAACCAGGTTGAACAA            <  1:24349394/64‑1                                                                     TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:21171063/1‑68                                                                     TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       <  1:29263672/68‑1                                                                     TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:666310/1‑68                                                                     TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:11330539/1‑68                                                                     TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:1489064/1‑68                                                                     TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:12655282/1‑68                                                                      CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:7799685/1‑67                                                                      CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:3836982/1‑67                                                                      CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:19961389/1‑67                                                                       CGGCCTACGGGTAGGTATATGCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:20850163/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATcc     >  1:20830092/1‑66                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:5473185/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:6501566/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:10731677/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:13837603/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:32881579/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:30436745/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     <  1:2701135/68‑1                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:26215544/1‑68                                                                       CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:20731480/1‑68                                                                        GGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACA    <  1:30220332/68‑1                                                                        GGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACA    <  1:27669537/68‑1                                                                          CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:18644998/1‑68                                                                          CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:18874215/1‑68                                                                          CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:25909383/1‑68                                                                          CCTACGGGTAGGTATATCAGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:4370125/1‑68                                                                                                                                               TGGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4230158‑4230085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  CP009273/4230118‑4230184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.