| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 344 (0.830) | 17 (0.050) | 4/88 | NT | 5.7% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 293 (0.900) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 183 total aligned reads displayed.
AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 AATCATAAAGCCTTTTGGTTTCAATATTTTGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCT < 1:10246194/68‑1AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCT < 1:24909178/68‑1 TCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGT < 1:25796687/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:9628826/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:32325660/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:33477705/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:8915318/68‑1 ATAAAGCCATTTGGTTTCAGTATTATGCAAAATCGCACAACAGTCATCCATTACGTTTTACTCTGTga > 1:15095342/1‑66 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:29502369/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC > 1:4785208/1‑67 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:2658522/1‑67 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:1485278/1‑67 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATACATTACGTTTTACTCTGTCAGCC > 1:12780617/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:33658803/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:29873260/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:29186990/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:6079118/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:15436883/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:22536597/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTAATCTGTCAGCCG > 1:4723025/1‑67 CCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC > 1:7531219/1‑67 CCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC > 1:21682099/1‑67 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:33177348/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:10791325/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:24867436/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:16259493/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:23191276/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:22908458/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:6275105/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:25056054/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:1566147/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:28266186/66‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:19620037/66‑1 CCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCCAGGGCGGCTGTCAGAGgt > 1:14799207/1‑66 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGCCGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:11753620/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:30358180/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:25663413/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:5557702/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:9290239/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGGGTAAAACGTA > 1:29949320/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:1141919/1‑68 ACTCTGTCAGCCGCCCGAGTGGCCGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAGCGGAATGGA > 1:26944424/1‑68 ACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGCCAGAGTAAAACGTAATGGA > 1:16127535/1‑68 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAt < 1:10514318/68‑2 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:30169411/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:16736834/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:3726971/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:16877111/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:17105254/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:18635190/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:17521010/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:17737584/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAATGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:338467/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:1295176/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:5215991/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:12132638/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:20537599/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:27226371/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:27609045/1‑65 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:30771194/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:33200454/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:26986014/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:3866055/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:16420363/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:17242115/1‑68 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCAGACAGAGTATAACGTATAGGATGACTGT > 1:2859657/1‑68 AGCCGCCCGAATGGACGTTGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:31043497/67‑1 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACTGAGTAAAACGTAATGGATGACTGTGG > 1:31724074/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTATAACGTAATGGGTGGCTGTGG > 1:24456638/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTATTGGATGACTGTGG > 1:495271/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:6820352/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:25662212/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:31245280/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:20979584/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:4528078/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:14352108/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:26074594/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:124407/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:20165183/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:34341172/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:28474447/1‑68 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:6664323/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATCGATGACTGTGGT > 1:32720292/1‑67 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:1293047/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:135989/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:24128632/1‑68 CCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCG > 1:17319486/1‑68 CGACTGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:3691236/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:7886323/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:11336816/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:1103555/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:18058287/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:16505095/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:2225543/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:10207615/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:18667147/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:14249551/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:14090650/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:18395525/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGAGCGAT < 1:21390634/68‑1 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |