| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4627219 | 496 (1.200) | 3 (0.010) | 3/98 | NT | 0.63% | coding (707/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon |
| ? | CP009273 | = 4627224 | 518 (1.430) | coding (712/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGCTCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4627146‑4627219‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagttTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCATA < CP009273/4627224‑4627158 CGGCTCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAG < 1:31311762/68‑1CGGCTCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAG < 1:30751195/68‑1CGGCTCACTCGATATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAG < 1:9966376/68‑1 GGCTCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGC > 1:11162788/1‑68 CTCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGCTCTCGGTAGTAGCGA > 1:9465806/1‑68 tccCTCGCTATGCGGATTCCGTCACTGACAATAAGCCCGGTCCTCTCCCCGATCTCGGTAGTAGCGAG > 1:31411027/4‑68 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAG > 1:329912/1‑68 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAG > 1:23787772/1‑68 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAG < 1:7404469/68‑1 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAG > 1:17999510/1‑68 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAG > 1:29708561/1‑68 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGA < 1:22088275/67‑1 TCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGA < 1:23492818/67‑1 TCACTCGCTATGCTGATTACGTCACAGACAATAACCCCGTTCCTCTCCCCGATCTCGGTAGTAGCCAG > 1:30278595/1‑68 CGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGGTCGCGGTAGTAGCGAGTTTAC > 1:15212921/1‑68 AGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAG > 1:12034259/1‑68 CCTCTCCCCGATCTCGGTAGTAGCGAGTTTTCGCAACTCGCGACTACCGAGATCGGGGAGAGGACCGG > 1:15230597/1‑68 ATCTCGGTAGTAGCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAGCGGGCTTATTGTC > 1:20005961/1‑68 GCGAGTTTACGCAACTCGCTACTACCGAGATGGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:10314219/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:8241128/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:32418778/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:19739773/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:19755970/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:12623799/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:4434824/68‑1 GCGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATC < 1:34142903/68‑1 CGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCA > 1:13156458/1‑68 CGAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCA > 1:22470070/1‑68 tAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:30954881/67‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACTGGCTTATTGTCAGTGACGGAATCA < 1:23451888/67‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTTTCAGTGACGGAATCAG < 1:4582754/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:34116906/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:4715328/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:6793037/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:32841701/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:7204684/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:32283176/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:7676139/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:8753449/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:898478/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:9377688/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:14117344/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:30236709/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:20203561/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:2455278/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:27168626/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:16370342/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAG < 1:1467897/68‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCA < 1:23377191/67‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCA < 1:7119151/67‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCA < 1:31590759/67‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCA < 1:30074183/67‑1 GAGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTACTGTCAGTGACGGAATCAG < 1:3948991/68‑1 AGTTTACGCAAGTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGGGACGGAATCAG < 1:34274187/67‑1 AGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGC > 1:3014686/1‑68 AGTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGC > 1:21419424/1‑68 GTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGC < 1:17148099/67‑1 GTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGC < 1:30541638/67‑1 GTTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGC < 1:317273/67‑1 TTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCAT > 1:18445799/1‑68 TTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCAT > 1:20345753/1‑68 TTTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCAT > 1:16626642/1‑68 TTACGCCTCTCGCTACTACCCAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:7761266/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCATA < 1:31303100/68‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCATA < 1:31241741/68‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCATA < 1:33474329/68‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:15186129/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:1665668/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:22274666/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:18463847/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:19809557/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:5443124/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:2064285/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:33073291/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:28635514/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:31780350/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:30066948/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:30944599/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCA < 1:30906000/66‑1 TTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGGCAGTGACGGAATCAGCA < 1:30770674/66‑1 TTACGCAACTCGCTACAACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCATA < 1:14442386/68‑1 CGGCTCACTCGCTATGCTGATTCCGTCACTGACAATAAGCCCGTTCCTCTCCCCGATCTCGGTAGTAGCGAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4627146‑4627219‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagttTACGCAACTCGCTACTACCGAGATCGGGGAGAGGAACGGGCTTATTGTCAGTGACGGAATCAGCATA < CP009273/4627224‑4627158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |