| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3202572 | 282 (0.680) | 12 (0.040) | 4/92 | NT | 5.6% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | CP009273 | = 3202615 | 170 (0.500) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||
CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3202498‑3202572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccagcgcAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG < CP009273/3202615‑3202550 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:21881479/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:34433650/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:19878182/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:33919633/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:20750090/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:1776397/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:33833848/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:1736559/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:16975414/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:635074/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:3371374/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:14534425/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:25559678/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:25597937/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:27478390/1‑67CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTC > 1:29575249/1‑67 GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG > 1:10375003/1‑67 GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG > 1:3073695/1‑67 GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG < 1:19393881/67‑1 GGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCG < 1:4113907/67‑1 TATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCA > 1:21724368/1‑67 TATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCA > 1:10865830/1‑67 ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC < 1:19587311/68‑1 ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC < 1:20002017/68‑1 ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC < 1:8931319/68‑1 ATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGC < 1:33645428/68‑1 TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC < 1:11819705/68‑1 TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC < 1:19135096/68‑1 TCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCG > 1:14762400/1‑67 ATCTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATGATGATCGGTGCGAGAGCGGAGGTATACGCC > 1:33620464/1‑68 CTACTGCGCTACTTTTTCGCCAGCGCCGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT > 1:33604643/1‑68 CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCCATCATCATCGGTGCGAGAGCGGAGGGATACGCCGT > 1:30136683/1‑68 CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT > 1:17755517/1‑68 CTACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGT > 1:4193771/1‑68 ACTGCGCTACTTTTTCGCGCGCGCAGCAGCAATCATCATCGGTGCGAGTGCGGAGGTATACGCCGTG > 1:18111548/1‑67 ACTGCGCTACTTTTTCGCCAGCGCAGCGGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTG > 1:33615854/1‑67 ACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGCGGGCGGAGGTATACGCCGTG > 1:24357491/1‑67 ACTGCGCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTG > 1:156788/1‑67 GCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTG > 1:9960419/1‑68 GCTACTTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTG > 1:10449348/1‑68 GCTACTTTTTCGCCAGCGCAGCAGCAATCAACATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTG > 1:32561843/1‑68 TTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAA > 1:2771674/1‑68 TTTTTCGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAA > 1:1508599/1‑68 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGCGCGGAGGTATACGCGGTGGCGCTGGAGAAAAAGT > 1:3438250/1‑68 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGT > 1:29735468/1‑68 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGT > 1:8956828/1‑68 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGT > 1:19264284/1‑68 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGT > 1:13547225/1‑68 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGG < 1:9143999/41‑1 CGCCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGG < 1:9101714/41‑1 CCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTA > 1:26246812/1‑67 CCAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTA > 1:24502813/1‑67 CAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGC < 1:24069158/68‑1 CAGCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGC < 1:33789635/68‑1 GCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCcc > 1:24863732/1‑66 GCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC > 1:31375076/1‑68 GCGCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC > 1:24901597/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:11998306/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:8668415/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:29246784/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:18329525/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:18536594/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:24697921/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG > 1:26168122/1‑68 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCA < 1:21243190/67‑1 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC < 1:8260184/66‑1 GCAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGC < 1:20580164/66‑1 CGGTTATTCGCCAACGATGGTGATGGTGGCGTTGATTGTGGTGTTTTATCTACTGCGCTACTTTTTCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3202498‑3202572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccagcgcAGCAGCAATCATCATCGGTGCGAGAGCGGAGGTATACGCCGTGGCGCTGGCGAAAAAGTAGCGCAG < CP009273/3202615‑3202550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |