| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3701786 | 132 (0.320) | 11 (0.030) | 7/88 | NT | 9.6% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 228 total aligned reads displayed.
TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3701708‑3701786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcctgctcAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < CP009273/3701789‑3701723 TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:21246630/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:8859850/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:7974250/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:21371325/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:21745617/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:17769692/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:24515596/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:26534156/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:27090923/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:32782234/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:30467307/1‑68 CAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:10664985/1‑68 CAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:31192959/1‑68 AGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGGGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:14969816/1‑68 AGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:1589820/1‑68 GCCTACGTCGCGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGCTGCAAAAAA > 1:18514327/1‑67 GCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:30837744/1‑67 GCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:19556232/1‑67 GCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:6411109/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:33434203/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:26685808/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:4086684/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:24101988/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:22451798/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:4862799/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:5207786/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:33200585/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:32413754/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:956292/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:31321139/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:16967092/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:11095160/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:1487418/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:11248025/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:12752178/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:19252043/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:14465028/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:17543868/1‑67 CTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCC < 1:12446713/68‑1 ACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:9161034/68‑1 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14845235/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:31550653/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:13902033/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:33807293/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:29708158/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:28483415/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:28311047/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:32310549/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:32632150/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14492313/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:4379938/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:5010987/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:6259734/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:6742886/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7436431/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8515249/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10307047/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:27335058/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:21966889/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:15930098/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:18151360/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:21611055/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:15843888/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:1884226/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:19125447/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:20820649/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:15340077/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:26895524/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:20552795/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCATGC > 1:32212915/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGGTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:33626074/1‑67 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:12127301/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:2796642/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:2387375/1‑68 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:33321540/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:24021878/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:1363081/1‑68 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:34405187/67‑1 CGAGTCTAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:19882068/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:30250814/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:25688487/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:32261179/67‑1 CTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGAGCAGGC < 1:12858343/68‑1 TTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGCGCAGGCTTTTTTGCATCTGCA > 1:20883780/1‑66 TCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGCGCAGGCTTTTTTGCATCTGCAGCTCA > 1:30170507/1‑68 CCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCGTGAG > 1:24360711/1‑68 GAGCTGCAGATGCAAAAAAGCCTTGTCAACGAGCAGGCTTTTTTGGATCTGCAGCTGATGAGGATGAG > 1:27254485/1‑68 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:11834069/67‑1 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGAGGAGAACCTCCGGGGGCAG < 1:11887267/67‑1 AAAGCCTGCGCAACGCGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:33475589/67‑1 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGTATGAGAACCTCCGGGGGCAGGGAGGTTCG < 1:6090914/67‑1 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGA < 1:24738272/68‑1 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:22243984/1‑67 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:13128783/1‑67 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:8294334/1‑67 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:26612146/68‑1 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:32954755/68‑1 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:21783061/1‑66 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCAGGGGGAAGCGAGGTTCG > 1:7758650/1‑66 CAACGAGCAGGCTTTTTTGCAGCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:22954733/68‑1 TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3701708‑3701786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcctgctcAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < CP009273/3701789‑3701723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |