| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4306574 = | 181 (0.440) | 10 (0.030) | 8/98 | NT | 6.4% | coding (462/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | CP009273 | 4306632 = | 133 (0.370) | coding (404/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
Only 100 of 286 total aligned reads displayed.
CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC > CP009273/4306508‑4306641 | ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGGCACCAGCGTCACCGGCTcgc < 1:33044963/68‑1 (MQ=255)ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc < 1:29831000/68‑1 (MQ=255)ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc < 1:15938263/68‑1 (MQ=255) tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg < 1:10087861/68‑1 (MQ=255) tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg < 1:31298221/68‑1 (MQ=255) atgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc < 1:27673693‑M1/2‑1 (MQ=255) atgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc < 1:27031773‑M1/2‑1 (MQ=255) atgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc < 1:7881841‑M1/2‑1 (MQ=255) tgatcaaggccttcgaagagacgcagaaacgcggcgtcaaccgcgcctagcaccgtctgcatctgc > 1:13092364‑M1/65‑66 (MQ=255) tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtcttcatctgc < 1:20392222‑M1/2‑1 (MQ=255) tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc > 1:14046799‑M1/65‑68 (MQ=255) tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc > 1:16249380‑M1/65‑66 (MQ=255) tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcagctgcgc > 1:9386083‑M1/65‑68 (MQ=255) gcgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc > 1:5913054/1‑65 (MQ=255) gatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt > 1:32417029‑M1/64‑68 (MQ=255) gatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt > 1:29322360‑M1/64‑68 (MQ=255) gatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt > 1:11215896‑M1/64‑68 (MQ=255) cgGTTGGAGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt > 1:7767253/1‑67 (MQ=255) tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc > 1:27574272‑M1/62‑68 (MQ=255) tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc < 1:19124407‑M1/7‑1 (MQ=255) ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTg < 1:17811427/67‑1 (MQ=255) ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc < 1:12344929/68‑1 (MQ=255) ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc < 1:32771107/68‑1 (MQ=255) ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc > 1:6835960/1‑68 (MQ=255) agaagagcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc < 1:17520460‑M2/50‑1 (MQ=255) ttGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCa < 1:29415688/67‑1 (MQ=255) cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt > 1:30345280/1‑68 (MQ=255) gAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt < 1:9685646/67‑1 (MQ=255) gAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt < 1:23202914/67‑1 (MQ=255) aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt > 1:18258378‑M2/11‑68 (MQ=255) aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt > 1:11465340‑M2/11‑68 (MQ=255) actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt < 1:24742218‑M2/58‑1 (MQ=255) actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt < 1:29288084‑M2/58‑1 (MQ=255) actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt < 1:24127976‑M2/58‑1 (MQ=255) actggcgctGGCCCGGCGAGGGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt < 1:19494647‑M2/58‑1 (MQ=255) cgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCaa < 1:1419453‑M2/63‑1 (MQ=255) gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCaaa < 1:22603703‑M2/64‑1 (MQ=255) gCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg > 1:33331892/1‑68 (MQ=255) cccGGCGAGTGGTCCATCAGCGCCCCCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg > 1:31707745/1‑67 (MQ=255) cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg > 1:8149953/1‑67 (MQ=255) cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg > 1:9581833/1‑67 (MQ=255) ggCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAg < 1:27301492/68‑1 (MQ=255) aacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGc > 1:12792353‑M1/38‑68 (MQ=255) aacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGc > 1:24520145‑M1/38‑68 (MQ=255) aacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGc > 1:16135197‑M1/38‑68 (MQ=255) cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg > 1:3778415/1‑68 (MQ=255) cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg > 1:11858061/1‑68 (MQ=255) cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg > 1:25996054/1‑68 (MQ=255) cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg > 1:5923682/1‑68 (MQ=255) cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg > 1:28834952/1‑68 (MQ=255) aGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAATCAGCGGCAGCgtg > 1:4594295/1‑68 (MQ=255) ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggtg > 1:26644899/1‑68 (MQ=255) ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtgg < 1:33950073/66‑1 (MQ=255) tCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGgtgt < 1:1860519/67‑1 (MQ=255) ccATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGa > 1:28073424/1‑68 (MQ=255) aTCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGAt > 1:18099769/1‑67 (MQ=255) tCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGc > 1:24674510/1‑68 (MQ=255) tCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGc > 1:13299743/1‑68 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:32354986/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:3925244/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:5044173/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:10262651/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:8357265/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:9152837/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:6578505/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:30940634/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:7320769/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:21161132/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:13129419/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:13595890/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:18311165/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:18936693/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:20158861/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:2090495/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:21494427/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:22287426/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:24881332/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGGGGTGTGATGCg > 1:29937802/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACACCGGCAGCGTGGTGTGATGCg > 1:14541662/1‑67 (MQ=255) aGCGACACCAGCGTCACCGGCCCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg > 1:23918350/1‑67 (MQ=255) gACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGc < 1:25511788/66‑1 (MQ=255) acacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGt > 1:21933533/1‑68 (MQ=255) caccgtctgcatctGCGCGGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGTTTCGGGAGTTcgca < 1:34073882‑M1/54‑1 (MQ=255) accgtctgcatctGCGCTGCCCCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGGTcgca < 1:19906849‑M1/54‑1 (MQ=255) gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc > 1:28452034/1‑67 (MQ=255) gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc > 1:15215799/1‑67 (MQ=255) gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc > 1:15750410/1‑67 (MQ=255) gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc > 1:23395661/1‑67 (MQ=255) cACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgca > 1:25158221/1‑68 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGGAGTTCGCAGCGCAGa > 1:1737272/1‑68 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa > 1:642997/1‑68 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa > 1:17027942/1‑68 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa < 1:21281935/68‑1 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa < 1:14665562/68‑1 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa > 1:22052056/1‑68 (MQ=255) ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa > 1:33196754/1‑68 (MQ=255) ggCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGAt > 1:8689729/1‑67 (MQ=255) gCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGc > 1:4379344/1‑68 (MQ=255) cTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa > 1:31954567/1‑68 (MQ=255) GCGCTGCACCAGTGTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAc < 1:5525735‑M1/68‑1 (MQ=255) | CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC > CP009273/4306508‑4306641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |