| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4440765 = | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (5/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 4440795 = | NA (NA) | noncoding (35/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 620 total aligned reads displayed.
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTC > CP009273/4440698‑4440832 | gtaaagcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcg > 1:30498067‑M1/68‑68 (MQ=255) aaagcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGcc < 1:24517827‑M1/3‑1 (MQ=255) agcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGCCgg < 1:14768965‑M1/5‑1 (MQ=255) agaaTTTGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCG < 1:21198346‑M1/67‑1 (MQ=255) agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGG < 1:6571671‑M1/68‑1 (MQ=255) agaaTTAGAGAAGAAGAAAAATAAGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGG < 1:34519667‑M1/68‑1 (MQ=255) agaaTTACAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGG < 1:7905125‑M1/68‑1 (MQ=255) gcgtgctcccagtagtcatgataagacgcggtaagtgatggatcaggcttcagtgcaccatcGCCGGa < 1:15020563‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcggtgcaccatcGCCGGa < 1:16963054‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgccccatcGCCGGa < 1:20924414‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGCCGGa < 1:16811206‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGCCGGa < 1:22457604‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGCCGGa < 1:324012‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGCCGGa < 1:10051332‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGCCGGa < 1:13189416‑M1/6‑1 (MQ=255) gcgtgctcccagtaggcatgataagacgcggtaagcgtcgcatcaggcttcagtgcaccatcGACGGa < 1:27756153‑M1/6‑1 (MQ=255) ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATaa > 1:33657731/1‑68 (MQ=255) agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGgc > 1:22668608/1‑67 (MQ=255) agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGgc > 1:20364309/1‑67 (MQ=255) agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTcgc > 1:16530612/1‑67 (MQ=255) agaaAAATATGGGGTATTGAGGGGTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTcgcg < 1:3142204/68‑1 (MQ=255) aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCgcgc > 1:17289227/1‑67 (MQ=255) aaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGcgccgc < 1:17941593/68‑1 (MQ=255) aaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGcgccgc < 1:21771665/68‑1 (MQ=255) aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCa < 1:19115531‑M2/68‑2 (MQ=255) aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCa < 1:23344347‑M2/68‑2 (MQ=255) aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCa < 1:29559545‑M2/68‑2 (MQ=255) atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCa < 1:30349776‑M2/67‑2 (MQ=255) atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCatcc < 1:17708311‑M2/68‑5 (MQ=255) atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCatcc < 1:22074305‑M2/68‑5 (MQ=255) atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCatcc < 1:15644411‑M2/68‑5 (MQ=255) tGGCGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCGCGCGCCGCatccg > 1:31703710‑M2/1‑63 (MQ=255) gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCatccggc < 1:14411941‑M2/68‑8 (MQ=255) ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCg > 1:9763594/1‑68 (MQ=255) aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAt < 1:26587250/67‑1 (MQ=255) aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAt < 1:26283880/67‑1 (MQ=255) ttGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATgg < 1:17126607/68‑1 (MQ=255) atGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATgg < 1:7221567/67‑1 (MQ=255) tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt > 1:19386658/1‑68 (MQ=255) tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt < 1:24792450/68‑1 (MQ=255) tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt > 1:23840015/1‑68 (MQ=255) tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt < 1:26858051/68‑1 (MQ=255) tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt > 1:10924304/1‑68 (MQ=255) tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt < 1:4722332/68‑1 (MQ=255) gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt > 1:20700658/1‑67 (MQ=255) gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt > 1:3750881/1‑67 (MQ=255) ggggTGCTATGCCGGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc < 1:28686561/67‑1 (MQ=255) gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:25213218/1‑67 (MQ=255) gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:2421956/1‑67 (MQ=255) gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:8795274/1‑67 (MQ=255) gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:7708366/1‑67 (MQ=255) gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:30992170/1‑67 (MQ=255) gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:21312302/1‑67 (MQ=255) gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:5085601/1‑65 (MQ=255) gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:603395/1‑65 (MQ=255) gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCAc < 1:5536593/67‑1 (MQ=255) gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCAc < 1:11348276/67‑1 (MQ=255) tGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGa < 1:6873014/68‑1 (MQ=255) ggcTAGGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCGCGCGCCGCatccggcctacgaatcggc > 1:27953965‑M2/2‑48 (MQ=255) gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGaa > 1:12412654/1‑68 (MQ=255) tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGGACTGAAg > 1:8533634/1‑67 (MQ=255) tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg < 1:2351658/67‑1 (MQ=255) tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg < 1:10464154/67‑1 (MQ=255) tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg < 1:12194437/67‑1 (MQ=255) tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGc < 1:25866054/68‑1 (MQ=255) tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg > 1:11754072/1‑65 (MQ=255) tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt < 1:11631256/68‑1 (MQ=255) gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTg > 1:9081078/1‑68 (MQ=255) ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 1:7480931/1‑68 (MQ=255) ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 1:14097672/1‑68 (MQ=255) ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 1:15369420/1‑68 (MQ=255) ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 1:5259559/1‑68 (MQ=255) ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTCAAGCCTGa > 1:19538040/1‑68 (MQ=255) ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACAGAAGCCTGa > 1:4340655/1‑68 (MQ=255) cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:5346692/1‑68 (MQ=255) cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:34139130/1‑68 (MQ=255) cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:31222150/1‑68 (MQ=255) cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt < 1:29242222/68‑1 (MQ=255) cTGATGCCGATGCGGAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACGGAAGCCTGAt < 1:16168873/68‑1 (MQ=21) tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 1:18799764/1‑67 (MQ=255) tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGAGCACTGAAGCCTGAt > 1:6342267/1‑67 (MQ=255) gcttcagtgcaccatcGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt < 1:33190399‑M1/51‑1 (MQ=255) cttcagtgcaccatcGCCGGATAAGGCGCTCGCGCCGCATCCGGCGCTGGTGCACTGAAGCCTGATGc < 1:27470320‑M1/53‑1 (MQ=255) tGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg > 1:32886217/1‑67 (MQ=255) tGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCg > 1:8323609/1‑67 (MQ=255) gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc > 1:1748450/1‑68 (MQ=255) gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc > 1:32104366/1‑68 (MQ=255) gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc > 1:29946059/1‑68 (MQ=255) cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg < 1:25688445/67‑1 (MQ=255) cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg < 1:28457933/67‑1 (MQ=255) ttCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 1:1828646/1‑67 (MQ=255) aGGCCGTATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 1:13662692/68‑1 (MQ=255) aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 1:28149144/68‑1 (MQ=255) aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 1:21471365/68‑1 (MQ=255) aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 1:12673967/68‑1 (MQ=255) aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 1:10240030/68‑1 (MQ=255) aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgc < 1:3891795/67‑1 (MQ=255) ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg > 1:15838684/1‑67 (MQ=255) gCCGGATgcggcgcgagcgccttatccggcctacgaatcggcatcaggcatagcaaccctcaataccc < 1:28246609‑M1/68‑62 (MQ=255) GCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 1:32486019‑M1/66‑1 (MQ=255) | AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTC > CP009273/4440698‑4440832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |