| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 353273 | NA (NA) | 6 (0.020) | 4/98 | NT | NA | noncoding (79/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353448 | NA (NA) | noncoding (54/79 nt) | REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 558 total aligned reads displayed.
CGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCT > CP009273/353206‑353339 | ccGGCCTACGTAGAGCTCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTg > 1:9262332/1‑68 (MQ=18) ccGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTg > 1:10131991/1‑68 (MQ=33) ctgCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:27921553/66‑1 (MQ=25) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCctacgagttcagtgc < 1:15441266‑M1/68‑16 (MQ=255) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCt > 1:29713360/1‑66 (MQ=31) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:4240736/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:23736631/1‑68 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:2087477/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:21688181/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:353628/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:27073193/1‑65 (MQ=35) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:25862720/1‑64 (MQ=35) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtg < 1:26415674/68‑1 (MQ=40) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTACAGCCGCTGa > 1:11702715/1‑64 (MQ=25) aCGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgtg < 1:30465119/68‑1 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:15222006/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:34062155/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGAGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:20020673/1‑68 (MQ=255) gCACTGAACTCGTAGGCCTGATACGCGTAGCGCATCAGGCACTTCCAGCCGCTGATCTGTGTCATCg > 1:14855778/1‑67 (MQ=14) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCgg < 1:29020083/68‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:20232025/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:1412435/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:11351972/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:5905721/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:1911508/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:18973526/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:18449157/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:22812866/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:23192547/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:23447350/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:16637920/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:30588332/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:16224978/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:15650558/1‑67 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCgg < 1:17455225/66‑1 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:24407974/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:9524531/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:7550941/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:13173386/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:18242706/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:14290155/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:16465052/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCAGTGTAAGCGGCt > 1:18011642/1‑68 (MQ=255) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:12676036/68‑1 (MQ=40) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAcc < 1:31268949/68‑1 (MQ=40) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAcc < 1:30135638/68‑1 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCGGCTACCGt > 1:29407347/1‑68 (MQ=25) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:21012933/68‑1 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:3354725/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:6989122/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:13703421/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAACGTGattc > 1:32519380/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTATCAGCGGCTACCGTGattc > 1:13391923/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcac > 1:26271451‑M1/1‑25 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:1238130/1‑68 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:31073470/1‑68 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:24639106/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:8122335/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:28291750/1‑67 (MQ=40) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcattc > 1:855055/1‑67 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTcc < 1:5206556/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTcc < 1:2771316/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:66211/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:21406851/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGcc > 1:10802911/1‑68 (MQ=255) gTAGCGCATCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggc > 1:8395789‑M1/1‑14 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca > 1:10382773/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca > 1:17732525/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCcaaca > 1:27613642/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGGGATTCATTCCCGCcaaca > 1:6202246/1‑67 (MQ=255) cgcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACACCcgc > 1:19708610/1‑68 (MQ=255) cgcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:13077923/1‑68 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:2496915/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:6490447/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:32942097/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc < 1:21150967/67‑1 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgcctcatccggcagaaacta > 1:32053912‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaacta > 1:735616‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaacta > 1:33850363‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaacta > 1:2198051‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaacta > 1:23968096‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaacta > 1:5272115‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaact > 1:7716794‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaact > 1:10022224‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaact > 1:19420474‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaact > 1:15936307‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaact > 1:25450623‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggccggataaggccttcacgccgcatccggcataaacta > 1:31539704‑M1/1‑6 (MQ=255) tCAGGCctacgagttcagtgctctacgtaggcaggataagccgttcacgccgcatccggcataaact > 1:32727403‑M1/1‑6 (MQ=255) cAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACAGCGCAtt < 1:16916130/68‑1 (MQ=255) ggCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaactaca > 1:3705545‑M1/1‑3 (MQ=255) ggCctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaactaca > 1:28634412‑M1/1‑3 (MQ=255) gCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATtcc > 1:8944234/1‑67 (MQ=255) cctacgagttcagtgctctacgtaggcgggataaggcgttcacgccgcatccggcataaactaca > 1:14571779‑M1/1‑1 (MQ=255) cctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaactaca > 1:4667903‑M1/1‑1 (MQ=255) cctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaactaca > 1:5475655‑M1/1‑1 (MQ=255) cctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaactaca > 1:11921723‑M1/1‑1 (MQ=255) cctacgagttcagtgctctacgtaggccggataaggcgttcacgccgcatccggcataaactaca > 1:1386467‑M1/1‑1 (MQ=255) cAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATtcct < 1:1711492/67‑1 (MQ=255) cAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATtcc < 1:3988314/66‑1 (MQ=255) | CGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGCATTCCT > CP009273/353206‑353339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |