| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 730100 | 40 (0.100) | 6 (0.020) | 5/104 | NT | 13.9% | pseudogene (512/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | = 730150 | NA (NA) | pseudogene (562/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
Only 100 of 124 total aligned reads displayed.
ACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGG > CP009273/730033‑730166 | aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:7706599‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:25263463‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:27292727‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:32852937‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:33811647‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:33105298‑M1/1‑68 (MQ=255) ccACTCATCAGGGTTGAAACCGCCACCGGactggtgaagggtatccgccaggctgcggcgctgcgttt > 1:4435036‑M1/1‑29 (MQ=255) aGGGTTGAAACCGCCACCGGcctggtgaagggtttccggcaggctgcggcgctgcgttttcgccagc > 1:20877854‑M1/1‑20 (MQ=255) aGGGTTGAAACCGCCACCGGactgctgaagggtatccgccaggctgcggcgctgcggtttcgccagc > 1:3335596‑M1/1‑20 (MQ=255) aaCCGCCACCGGactgctgaagggtatacgccaggctgcggcgctgcgttttcgccagctccccggtg > 1:29038638‑M1/1‑12 (MQ=255) aaCCGCCACCGGTGCGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCCGCAGTCcggcg > 1:2831275/1‑68 (MQ=255) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTgcggcg > 1:22290493/1‑68 (MQ=18) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:31192014/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:18399056/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:17395239/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:30921346/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:20698616/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:7283834/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:22329364/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:24254673/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:27079227/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:26252648/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:12578683/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:452091/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:33307030/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:33272527/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:13543152/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggc < 1:3953793/67‑1 (MQ=31) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCGTCAGCAGTCcggcg > 1:5771733/1‑68 (MQ=18) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:30218783/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:25593268/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:13216854/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:6785005/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:34283936/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:1474964/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:32402893/1‑67 (MQ=33) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:22696062/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:32545051/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc < 1:5988834/68‑1 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:23829428/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:28403904/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:13572572/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:29641313/1‑68 (MQ=35) gCCACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcgg < 1:15376769‑M1/68‑61 (MQ=255) gCCACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcgg < 1:12263633‑M1/68‑61 (MQ=255) gCCACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcgg < 1:31107065‑M1/68‑61 (MQ=255) gCCACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcgg < 1:18491628‑M1/68‑61 (MQ=255) ccACCGGcctgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:25418193‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:34465547‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:7082587‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:4147999‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:4581912‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:27057311‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:1613514‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:18010095‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:20397273‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:22086559‑M1/1‑7 (MQ=255) ccACCGCactgctgaagggtatccgccaggctgcggcgctgcgtgttcgccagctcaccggtggcggt < 1:10792934‑M1/68‑62 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:27842621‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:10270470‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:21864032‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:15610788‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:25457311‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:7386813‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:29847471‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:199436‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:1179172‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:8715651‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:12588697‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:10822346‑M1/67‑62 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:26616458‑M1/67‑62 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:10022218‑M1/67‑62 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:31337417‑M1/67‑62 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:26088881‑M1/67‑62 (MQ=255) cccGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:2150854/67‑1 (MQ=25) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt > 1:10300343‑M1/1‑5 (MQ=255) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcgggt > 1:5515587‑M1/1‑5 (MQ=255) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:32281107/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:7709697/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:15256186/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:16481683/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:8545727/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:18421578/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:11375959/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:29061175/68‑1 (MQ=35) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:10169585‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:29399612‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:2644497‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:16526343‑M1/68‑66 (MQ=255) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:25777189/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:5777698/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:24451063/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:24307484/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:15580465/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:10266570/68‑1 (MQ=35) ggactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca > 1:21528990‑M1/1‑2 (MQ=255) ggactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca > 1:2008843‑M1/1‑2 (MQ=255) ggactgctgaagggtagccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca > 1:24506654‑M1/1‑2 (MQ=255) ggTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACgg > 1:4518412/1‑68 (MQ=35) ggTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACgg > 1:11946451/1‑68 (MQ=35) | ACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGG > CP009273/730033‑730166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |