| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 411 (0.990) | 32 (0.090) | 10/92 | NT | 9.3% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 289 (0.850) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 810 total aligned reads displayed.
TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 | accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:21650933‑M1/2‑1 (MQ=255)accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:7633838‑M1/2‑1 (MQ=255)accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:15905943‑M1/2‑1 (MQ=255) tCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACG > 1:10031131‑M1/1‑68 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:11151039‑M1/3‑1 (MQ=255) cttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:12158937‑M1/3‑1 (MQ=255) tcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcg > 1:4790978‑M1/63‑68 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc > 1:23174502‑M1/62‑68 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:27291752‑M1/7‑1 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:4362519‑M1/7‑1 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagaagtatgtttgACGgcgc < 1:32575213‑M1/7‑1 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:34330433‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:5605419‑M1/61‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCA > 1:20202651‑M1/1‑68 (MQ=255) tgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAt < 1:25065160‑M1/9‑1 (MQ=255) cacaATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCAT < 1:6107682‑M1/68‑1 (MQ=255) acaATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATT > 1:6382448‑M1/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:32852171/1‑68 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa < 1:2287081/67‑1 (MQ=255) aaCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctg < 1:18725250/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:3588502/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:27071567/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:20433793/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:1267215/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:16528205/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:14069642/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:4102714/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACAGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:26622117/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:9403927/1‑66 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:19698539/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:2267212/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:24828708/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:7013804/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:13686235/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:15746914/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:881424/1‑68 (MQ=255) aTTCCACGCCAGCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:14248912/68‑1 (MQ=255) ttCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTa < 1:19051626/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:23878569/68‑1 (MQ=255) acacctcccgcattatgagcagtatgtttgGCGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCaa < 1:19528172‑M1/38‑1 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTTTTCAAt > 1:30714951/1‑68 (MQ=255) ccATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt > 1:5736368/1‑68 (MQ=255) ccATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt > 1:17699655/1‑68 (MQ=255) acctcccgcattatgagcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt < 1:12475218‑M1/40‑1 (MQ=255) acctcccgcattatgagcagtatgtttgACGGCGCAGTTCCAAAAGCGAGGTTGCTGCGTATTCAAt < 1:31145783‑M1/39‑1 (MQ=255) aTCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaa < 1:21456667‑M2/68‑3 (MQ=255) aaTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcg < 1:21972460‑M2/67‑7 (MQ=255) aaTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcg < 1:20077827‑M2/67‑7 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTCCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:15468864‑M2/1‑60 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGTAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:15014378‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:24361172‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:10447099‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:11481740‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:4554219‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:1687807‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:2858030‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:27831891‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:677481‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:543020‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccg < 1:21136664‑M2/67‑10 (MQ=255) ttcttTACCGGGCTTACGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaa > 1:5170196‑M1/1‑25 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCCATTAATGCGCCGTCa < 1:3838288/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:30446914/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:24187311/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:10970110/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:22325574/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:32219781/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:11913196/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:906444/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:723903/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:20764450/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:18212949/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:17141758/67‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaaa < 1:28376149/68‑1 (MQ=255) agcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:25509604‑M1/55‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:31664192‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCTCATTTCGAAAAGCGAGGTTGCTGCTTATTCAATTAATGCGCCGTCAAACAt < 1:16613582/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAATAGCGAGGTTGCAGCGTATACAATTAATGCGACGTCAAACaa > 1:28932659/1‑67 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:2343543/1‑68 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:13048314/68‑1 (MQ=255) tACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:26885296/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:29375069/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:26022565/1‑67 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:8340854/1‑66 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:29987976/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:25718099/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:13416620/68‑1 (MQ=255) tttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc < 1:17387367‑M1/64‑1 (MQ=255) gCTTACGGCGCATTTCGAAATGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:14511633/67‑1 (MQ=255) ttACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:9652465/68‑1 (MQ=255) ttACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt > 1:18412745/1‑68 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:8606401‑M1/66‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:29567831/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTGGCTGCGTATTCAATTaatgcgccgaaagcccggtaaagaagc > 1:3381319‑M2/1‑41 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaattgcgccgtaatcccggtaaagaagcc > 1:30883180‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:33186091‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:27701016‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:28015562‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagccaggtaaagaagcc > 1:16109577‑M1/1‑10 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:5884012‑M1/68‑1 (MQ=255) | TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |