| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2724434 = | 426 (1.030) | 65 (0.180) +AAGCTG |
5/100 | NT | 14.6% | noncoding (83/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 4028969 | NA (NA) | noncoding (79/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
Only 100 of 554 total aligned reads displayed.
ATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT > CP009273/2724367‑2724489 | tCCCCCTCCATCATGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgc < 1:21995449/68‑1 (MQ=255) tCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgc < 1:18794562/68‑1 (MQ=40) tCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgc < 1:3889826/68‑1 (MQ=40) tCCCCCACCTTCAGGCAGCTTCCGAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgc < 1:7303206/68‑1 (MQ=14) ccccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgct > 1:5754851/1‑67 (MQ=40) ccccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgct > 1:23678595/1‑67 (MQ=40) ccccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgct > 1:32959747/1‑67 (MQ=40) ccccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgct > 1:3626936/1‑67 (MQ=40) cccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgctgc < 1:31415308/68‑1 (MQ=255) cccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgctgc < 1:28114944/68‑1 (MQ=255) tcagattgaacgctggcggcaggcctaatacatgcaagtcgaacggtaacaggaagcagcttgctgct < 1:16397580‑M1/6‑1 (MQ=255) tcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttgctgct < 1:2841728‑M1/6‑1 (MQ=255) tcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttgctgct < 1:2751262‑M1/6‑1 (MQ=255) tcagattgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttgctgc > 1:7765631‑M1/63‑67 (MQ=255) ccTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAgctgct > 1:31593119/1‑68 (MQ=255) ccTCCATCAGGCAGCTTCCCAGACATTACTCACCAGTCCGCCACTCGTCAGCGAAGCAGCAAgctgct > 1:22767802/1‑68 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:962114/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:22267885/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:10973458/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:25247249/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:25034573/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:24423296/68‑1 (MQ=255) tCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:11071468/68‑1 (MQ=255) tCCATCAGCCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTc < 1:28557930/68‑1 (MQ=255) attgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTc < 1:1431351‑M1/8‑1 (MQ=255) ttgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTc > 1:13266291‑M1/58‑65 (MQ=255) ttgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTc > 1:33363619‑M1/58‑65 (MQ=255) ttgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTCCt > 1:16617483‑M1/58‑67 (MQ=255) ttgaacgctggcggcaggcctaacacatgcaagtcgaacggtaacaggaagcagcttGCTGCTTCCt > 1:68635‑M1/58‑67 (MQ=255) tCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGt > 1:1236669/1‑68 (MQ=255) tCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGt < 1:8338524/68‑1 (MQ=255) aGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGtt > 1:32726682/1‑67 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCCGCAAGCTGCTTCCTGTTAcc > 1:9812542/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAcc > 1:2720395/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAcc > 1:25712187/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAcc > 1:15558706/1‑68 (MQ=255) gCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAACCTCCTTCCTGTTAcc > 1:21057872/1‑68 (MQ=255) cAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTAcc < 1:19034677/67‑1 (MQ=255) ttCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCg < 1:4394224/68‑1 (MQ=40) tCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCg > 1:13096439/1‑67 (MQ=40) cccAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAc < 1:27053754/68‑1 (MQ=40) cAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt < 1:9162153/68‑1 (MQ=40) aGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt > 1:31929239/1‑67 (MQ=40) aGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACtt > 1:26736483/1‑67 (MQ=40) gACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGc > 1:12181044/1‑68 (MQ=40) aCATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCa > 1:15793060/1‑68 (MQ=40) aCATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCa > 1:30293894/1‑68 (MQ=40) aCATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCa > 1:2172259/1‑68 (MQ=40) cATTACTCCCCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:33185402/1‑68 (MQ=255) cATTACTCACCCGTCCGCCACTCGTCCGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTg < 1:27751129/65‑1 (MQ=255) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTg < 1:28850661/65‑1 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGc < 1:7940524/66‑1 (MQ=255) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGc < 1:1378476/66‑1 (MQ=255) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:24827153/1‑68 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:12740901/1‑68 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:11515128/1‑68 (MQ=40) cATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAt > 1:27321610/1‑68 (MQ=40) aTTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtg > 1:5497627/1‑68 (MQ=40) ttACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgt < 1:21374912/68‑1 (MQ=255) ttACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgt < 1:17164876/68‑1 (MQ=255) ttACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgt < 1:22966252/68‑1 (MQ=255) ttACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgt < 1:19654414/68‑1 (MQ=255) taacacatgcaagccgaccggtaacaggacgcagcttGCTGCTTCCTGTTACCGTTCGACTTGCAtgt > 1:25403808‑M1/38‑68 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:14591838/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:15240735/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:16159036/68‑1 (MQ=255) tACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCAtgtg < 1:17922911/68‑1 (MQ=255) aCTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATgtgt > 1:33987792/1‑68 (MQ=255) aCTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATgtgt > 1:14765270/1‑68 (MQ=255) cTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGtt > 1:25981706/1‑68 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTg > 1:108289/1‑44 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTa > 1:6706813/1‑68 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTa > 1:32114309/1‑68 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTa > 1:21562258/1‑68 (MQ=255) tCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTa > 1:26243550/1‑68 (MQ=255) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTTCCGTTCGACTTGCATGTGTTAgg > 1:29234491/1‑67 (MQ=255) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:9519753/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:7025928/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:8914451/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:24192955/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:10014612/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:26403550/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:30156800/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:31014117/1‑67 (MQ=40) cccGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAgg > 1:30814868/1‑67 (MQ=40) ccGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTgcc > 1:7622607/1‑68 (MQ=40) gCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTgccg > 1:10356150/1‑67 (MQ=40) gCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTgccg > 1:18259708/1‑67 (MQ=40) gCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGCTCGACTTGCATGTGTTAGGc > 1:464104/1‑61 (MQ=255) aCTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCa > 1:2396398/1‑67 (MQ=40) aCTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCa > 1:3241523/1‑67 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:20082185/68‑1 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:6346497/68‑1 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:20338468/68‑1 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:17432238/68‑1 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:16916976/68‑1 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:14146817/68‑1 (MQ=40) tCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCg < 1:11736931/68‑1 (MQ=40) gCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCaa > 1:34203287/1‑67 (MQ=40) gCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCaa > 1:29884945/1‑67 (MQ=40) | ATCCCCCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT > CP009273/2724367‑2724489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |