| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 6 (0.020) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 595 total aligned reads displayed.
CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATG > CP009273/2787434‑2787568 | tAAGGCTTTTACTCCGCATCCGACAATCTGTACGTGAACAGGAATAAATCTATGTTGGCCGGGTAAgg < 1:31871824/68‑1 (MQ=255) gCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGTCCGGGTAAGGCGGa > 1:31319227/1‑68 (MQ=255) gCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:5058000/1‑68 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACCGGAAGAAATCTATGTTGGCCGGGTccggcgtag > 1:19261994‑M1/1‑59 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:33624195/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:10776139/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:16765246/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa < 1:22795550/67‑1 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:29162944/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:29887226/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGATAAGGCGGa > 1:27181016/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAAGCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa < 1:14423824/67‑1 (MQ=255) aCGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc > 1:2459139/1‑67 (MQ=255) cgccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc > 1:7070881/1‑66 (MQ=255) cgccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc > 1:19646667/1‑66 (MQ=255) cgccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGACGGGTAAGGCGGAGCCGc > 1:25529107/1‑66 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct < 1:14849085/68‑1 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct < 1:23108764/68‑1 (MQ=255) ccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct > 1:6158338/1‑67 (MQ=255) aTCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCgg < 1:14654606/67‑1 (MQ=255) cAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAg > 1:26747133/1‑68 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa < 1:3443221/68‑1 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa > 1:30713489/1‑68 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa > 1:18637290/1‑68 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa < 1:6928748/68‑1 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:4096938/1‑68 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:22704172/1‑68 (MQ=255) tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:904942/1‑67 (MQ=255) tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAAt < 1:9853588/68‑1 (MQ=255) cTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATc < 1:15443852/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:8079259/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa > 1:11839978/1‑68 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGATCTCCGGCAAAAAGAATCa > 1:22513544/1‑68 (MQ=255) gTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCaa < 1:32167688/68‑1 (MQ=255) gTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCaa > 1:20007274/1‑68 (MQ=255) gTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCaa > 1:8221546/1‑68 (MQ=255) gTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCaa < 1:24123259/68‑1 (MQ=255) aCGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa < 1:30363179/68‑1 (MQ=255) aCGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa < 1:13369702/68‑1 (MQ=255) aCGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa < 1:12268270/68‑1 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATaa < 1:16531737/68‑1 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:16352203/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:20572863/1‑67 (MQ=255) tGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa > 1:14044079/1‑68 (MQ=255) gAACATGACGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:5425091/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa < 1:13177915/68‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:28102400/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:33005321/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:26252859/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:10279216/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:25979823/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:2513125/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:19016314/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:13677709/67‑1 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:29759541/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:20937436/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:15807070/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:30075729/1‑68 (MQ=255) aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAtt < 1:28571930/68‑1 (MQ=255) aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAtt < 1:23554103/68‑1 (MQ=255) aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAtt < 1:18186419/68‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcgc > 1:12834505/1‑68 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcgc < 1:17627724/68‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcgc > 1:9661005/1‑68 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcg < 1:17719607/67‑1 (MQ=255) aTCTATGTTGGCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgcctt > 1:15598067‑M1/1‑17 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:11218716/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:22011983/1‑67 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa < 1:3659316‑M2/67‑2 (MQ=255) cTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGac < 1:30443026‑M2/67‑3 (MQ=255) aTGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccg < 1:27294322‑M2/68‑6 (MQ=255) tGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccgg > 1:23982870‑M2/1‑62 (MQ=255) tGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccg < 1:4830643‑M2/67‑6 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:31115451‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:5213353‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:26520312‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc > 1:7655139‑M2/1‑61 (MQ=255) ggCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGcgcg < 1:33424957/68‑1 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:33925106‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:9311774‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:19819406‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:8629896‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:20416046‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:5927736‑M1/68‑62 (MQ=255) ccGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaaca > 1:28337067‑M1/1‑6 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggccaac > 1:11550398‑M2/1‑56 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:29361824/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:27860619/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:15958460/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:424753/1‑68 (MQ=255) cGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaaca < 1:18421744‑M1/67‑63 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:28957222/67‑1 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:21419343/67‑1 (MQ=255) gggTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGaa < 1:22126509/68‑1 (MQ=255) tcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaacatagat > 1:6604737‑M1/1‑1 (MQ=255) tcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaacataga < 1:34106711‑M1/67‑67 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:7276268/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:17162716/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:27479709/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:10022980/67‑1 (MQ=255) | CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATG > CP009273/2787434‑2787568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |