| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 401 (0.970) | 21 (0.060) | 10/98 | NT | 7.4% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 176 (0.490) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 674 total aligned reads displayed.
ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 | tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:10652757‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:29378673‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactgaaacgcagtgttaaaggtat < 1:23077857‑M1/1‑1 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:3952316/1‑65 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:6967117/1‑65 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgct < 1:10029309/68‑1 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgct < 1:17143238/68‑1 (MQ=255) gccgtttatacgcccgccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:14783900‑M1/64‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:22799911‑M1/64‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgct < 1:10171811‑M1/4‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:30070569/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:32579494/68‑1 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:22323672/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:21284037/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:8775982/1‑67 (MQ=255) cgtttatacgccagccggggagtccgctgtgcgcaagaactggcacgcagtggttaaggtatgctgc < 1:30423420‑M1/6‑1 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc > 1:33342221‑M1/62‑67 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGcc > 1:19960745‑M1/62‑68 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGcc > 1:4271291‑M1/62‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:27000475/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:9016940/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:2165008/1‑68 (MQ=255) aacgcttttcgcgaaggaacgcggattattgtggtcggtgatttcgacgccgCTCAGTTGCTGCCAgg > 1:1549479‑M2/53‑68 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAgg < 1:25568120/67‑1 (MQ=255) atacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGgc > 1:14477581‑M1/57‑68 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgca > 1:6088066/1‑68 (MQ=255) ccTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag < 1:16886979/68‑1 (MQ=255) catCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagc < 1:26193140/66‑1 (MQ=255) cTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagc < 1:25908235/68‑1 (MQ=255) ttCGCGAAAAGCGTTTTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagca < 1:18422629/68‑1 (MQ=255) ttCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagca > 1:6448853/1‑68 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:29882994/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:2804243/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:16426900/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:28622892/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:30573709/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:25322862/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:758240/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:34161495/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:24476620/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:9645592/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:7426265/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:9862333/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:1817146/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:11501615/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:12923326/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:20401182/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:14992010/68‑1 (MQ=255) ccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCt > 1:24152855‑M1/48‑68 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCt > 1:34004862‑M1/47‑67 (MQ=255) aaaGCGTTGTAAAGGAGCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCttt < 1:23784757/68‑1 (MQ=255) aGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTa > 1:30917866/1‑67 (MQ=255) gTTGTAAAGGATCTCACCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAacac < 1:28425175/68‑1 (MQ=255) acgcagtgcgcaagacctggaacgcccggttaaacgtaTGCGGCCAGGGCAGCATACCTTTAACACt > 1:11930180‑M1/39‑67 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:3231000/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATCAATTTAACACTGCGt > 1:564769/1‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:4825464/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:17650161/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:22726363/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:31917792/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt > 1:6653654/1‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt > 1:10493933/1‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt > 1:26703681/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCGGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:19133062/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:7174152/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:3587122/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:12117519/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACATTTAACACTGCCTTcc > 1:21859327/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:28934679/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:20193060/1‑68 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGtt < 1:3283369/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:20602302/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:3458936/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTAAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:15607978/68‑1 (MQ=255) agaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:24774439‑M1/27‑68 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTg < 1:10981400/68‑1 (MQ=255) ggCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcg < 1:31134529/68‑1 (MQ=255) ccTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc < 1:22030264/67‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:27404988/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:8503803/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:18880192/68‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:8080655‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:10797883‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:13497667‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:20859202‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:13643263‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGAAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:5236662‑M2/57‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:25232834‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:12499074‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:13870733‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:15213800‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:8269704‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:29204245‑M2/58‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:23453644‑M2/59‑1 (MQ=255) acgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:19804729‑M2/7‑66 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:15953647‑M2/63‑1 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:9430766‑M2/5‑67 (MQ=255) tCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCgg < 1:19568599/68‑1 (MQ=255) tCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg > 1:27513302/1‑67 (MQ=255) aggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:1313554‑M1/62‑1 (MQ=255) | ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |