| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3215213 = | 259 (0.620) | 16 (0.050) | 6/96 | NT | 6.3% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 250 (0.700) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
Only 100 of 356 total aligned reads displayed.
GGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAT > CP009273/3215146‑3215280 | gCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGcgcc > 1:29874752/1‑68 (MQ=255) gCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGcgcc > 1:7620205/1‑68 (MQ=255) ttACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGcgcc > 1:3800213/1‑66 (MQ=255) ttACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGcgcc > 1:20427809/1‑66 (MQ=255) gttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:16641619‑M1/2‑1 (MQ=255) gttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:25624455‑M1/2‑1 (MQ=255) gttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:32934895‑M1/2‑1 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:21899083‑M1/2‑1 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:15526906‑M1/2‑1 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGc > 1:30585797‑M1/64‑67 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGc > 1:23880408‑M1/64‑67 (MQ=255) tACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCt < 1:19940889/68‑1 (MQ=255) tACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCt < 1:21444408/68‑1 (MQ=255) tACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCt < 1:14610422/68‑1 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt > 1:3983988‑M1/63‑67 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt < 1:32487703‑M1/5‑1 (MQ=255) tgatatagaagtcgatgatttctttactgaggcgtgccagatcgatatccaccgcatcgtaaCCGCt > 1:32462103‑M1/63‑67 (MQ=255) aCCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCt > 1:24684625/1‑67 (MQ=255) cAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGcc > 1:3495237/1‑68 (MQ=255) cAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGcc > 1:7777573/1‑68 (MQ=255) cAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGcc > 1:33571313/1‑68 (MQ=255) atatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCTGcc < 1:11293436‑M1/8‑1 (MQ=255) atatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCTGcc < 1:8945510‑M1/8‑1 (MQ=255) aGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCa > 1:17150259/1‑68 (MQ=255) aGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCa > 1:23239029/1‑68 (MQ=255) aCATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAgc > 1:24407227/1‑68 (MQ=255) aCATTAAAAACGTCACCGGTATTTTAATTGTCGACAAACCCACGCCCGCCCTGCGCGCCGCTGCCAgc > 1:10584478/1‑68 (MQ=255) aaaaaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGtt < 1:17466327/68‑1 (MQ=255) aaaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGa < 1:2155025/68‑1 (MQ=255) aaaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGa < 1:6258156/68‑1 (MQ=255) aaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGa > 1:34293303/1‑67 (MQ=255) aaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGa > 1:28039496/1‑67 (MQ=255) aCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGAcc > 1:20160040/1‑68 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:9607628/1‑68 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:6334904/1‑68 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:8848612/1‑68 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:16225991/1‑68 (MQ=255) gacACCGGTACTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:31257040/66‑1 (MQ=255) gTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:24892517/68‑1 (MQ=255) gTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:6825960/68‑1 (MQ=255) gTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:6014570/68‑1 (MQ=255) gTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:34185088/68‑1 (MQ=255) gTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:19186688/68‑1 (MQ=255) gTCACCGGTATTTTAAATGTCGGCAAACCCCCGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:4560116/68‑1 (MQ=255) cACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGAc < 1:5255015/67‑1 (MQ=255) cACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACa < 1:26066813/68‑1 (MQ=255) cACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACa < 1:31846595/68‑1 (MQ=255) ccGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAat < 1:28239065/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAACCCCACGCCCGCCCTGCTCGCCGCTGCCAGCGCGTTGACCGACAata < 1:16763648/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:7003366/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:18822122/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:15876112/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:20768387/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:4073097/68‑1 (MQ=255) ggTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAatat < 1:26929205/68‑1 (MQ=255) ggTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata > 1:574184/1‑67 (MQ=255) aTTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATTTg > 1:15373196/1‑68 (MQ=255) aTTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCt < 1:12404993/67‑1 (MQ=255) aTTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCt < 1:4976671/67‑1 (MQ=255) ttttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:9423320/68‑1 (MQ=255) ttttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:9866918/68‑1 (MQ=255) ttttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:22834985/68‑1 (MQ=255) tAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGtttt > 1:26261372/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCCGCGCGTTGACCGACAAGATCTGTTTTa > 1:1407216/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGCCAATATCTGTTTTa > 1:11093349/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:10050647/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:11565993/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:1356982/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:1438247/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:14932215/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGCCCGACAATATCTGTTTTATc > 1:30940807/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATc > 1:2833745/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATc > 1:7418311/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATc > 1:27617883/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATc > 1:23380766/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTGTTATc > 1:22619810/1‑68 (MQ=255) cGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGAc < 1:11892123/67‑1 (MQ=255) cGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGAc < 1:15235115/67‑1 (MQ=255) cAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACttt < 1:20328297/67‑1 (MQ=255) aaaCCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTc < 1:29435615/67‑1 (MQ=255) aaaCCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTc < 1:10655674/67‑1 (MQ=255) cccACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACgc > 1:27843810/1‑67 (MQ=255) ccACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGa > 1:12267881/1‑67 (MQ=255) atccaccgcatcgtaaCCGCTGCCCGCGCGTTGACGGACAATATCTGTTTTATCGCCTTGCACGAAc < 1:12723656‑M1/51‑1 (MQ=255) gcccgcccTGCGCGCCGCTGCCAGCGCGTTGCCCGACAATATCTGTTTTATCGACTTTCACGAACCCg > 1:19443573/1‑68 (MQ=255) ccaccgcatcgtaaCCGCTGCCCGCGCGGTGCCCGACAATATCTGTTTTATCGACTTTCACGAGCCCg < 1:19560525‑M1/54‑1 (MQ=255) ccaccgcatcgtaaCCGCTGCCCGCGCGGTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCg < 1:131613‑M1/54‑1 (MQ=255) ccaccgcatcgtaaCCGCTGCCAGCGCGGTGACCGACAATATCTGTGTTATCGACTTTCACGAACCCg < 1:28831572‑M1/54‑1 (MQ=255) ccaccgcatcgtaaCCGCTGC‑AGCGGGGTGACCGACAATATCTGTTTTATCGGCTTTCACGAACCCg < 1:25346754‑M1/53‑1 (MQ=255) cccgcccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCg > 1:33185358/1‑67 (MQ=255) ccgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCa < 1:27166878‑M1/57‑1 (MQ=255) gcccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAg < 1:1697951/68‑1 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCg > 1:18265666/1‑68 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCg > 1:20851531/1‑68 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCAAGAACCCGGCAGCg > 1:32136295/1‑68 (MQ=255) tGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGt < 1:30118708/68‑1 (MQ=255) gcgcCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc > 1:1031737/1‑68 (MQ=255) cgccgcTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACg > 1:17798075/1‑68 (MQ=255) aCCGCTGCCAGCGCGTTGAGCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc < 1:24948380‑M1/65‑1 (MQ=255) aCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGa < 1:20590469‑M1/67‑1 (MQ=255) | GGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAT > CP009273/3215146‑3215280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |