| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 378 (0.910) | 19 (0.050) | 12/96 | NT | 5.3% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 359 (1.010) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 851 total aligned reads displayed.
TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 | tgcatggagttaaagtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCggg > 1:6265360‑M1/61‑68 (MQ=255)tgcatggagttaaagtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCggg > 1:26626099‑M1/61‑68 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:31257955‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:16557639‑M1/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:9600023/68‑1 (MQ=255) gTCAACGAAACCGGCGCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggat < 1:30938978/68‑1 (MQ=255) tCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatg > 1:33599060/1‑68 (MQ=255) cAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgg < 1:10260937/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:29771509/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:13610872/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:23159911/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:21971752/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:32078178/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga > 1:32969091/1‑68 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:17030436/68‑1 (MQ=255) aaCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatca < 1:2054640/68‑1 (MQ=255) tctGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCcgcg < 1:29277755/67‑1 (MQ=255) tctGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCcgcg < 1:25623576/67‑1 (MQ=255) gACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt < 1:30286620/68‑1 (MQ=255) cTCCAGTTCGATGTATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:30561152/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:26967163/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc > 1:21526707/1‑68 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc > 1:13494885/1‑68 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:7796397/68‑1 (MQ=255) tCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCg < 1:18752294/68‑1 (MQ=255) tCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCg < 1:33271040/68‑1 (MQ=255) tCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCg > 1:25892234/1‑68 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:4235955/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:21260984/68‑1 (MQ=255) aGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCt > 1:18208334/1‑68 (MQ=255) gTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa > 1:17864488/1‑68 (MQ=255) tCGATGGATAACTTGCTGGAACTGCTGCTGGCAGGCGTGATGGATATCATCCGCGCCATGCGTCTa < 1:27522004/66‑1 (MQ=39) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:7538218/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:28827848/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:25245990/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:24851482/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:24650170/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:22883338/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:5407807/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:29446631/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:10528728/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:19549196/67‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:8362649/68‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:24150766/68‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCCGGATGGATATCACCCGCGCCATGCGTCTATTAg < 1:16275325/68‑1 (MQ=255) tGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGt < 1:28557363/67‑1 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:11404403‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:13188971‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:15988452‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:22137401‑M2/68‑4 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:23826033‑M2/1‑63 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:24479644‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:10723940‑M2/67‑5 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGtggtactaatagccgcatggcgcggctgttatcccgcccgcc > 1:4786635‑M1/1‑26 (MQ=255) tGCTCGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACAAcccg < 1:28186778‑M2/66‑5 (MQ=255) atatccgggttgttctgcCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGcc > 1:4559873‑M1/19‑68 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:919324‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:12824160‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:1901366‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:23460197‑M2/1‑59 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:5050479/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:8132094/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:20079030/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:14634362/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:20446540/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:31429179/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:6991835/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:3255619/1‑68 (MQ=255) ctgctgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcagca > 1:14331115‑M2/1‑63 (MQ=255) tgctgGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcag > 1:17375741‑M1/1‑14 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:6616876/68‑1 (MQ=255) tctgcCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagt > 1:12658175‑M2/2‑49 (MQ=255) ctgGCAGGCGGGATGTATATCATCCGCGCCATGCGTCTATTAGAACCACCCGCCTGGcagcagcagt > 1:12299210‑M2/1‑57 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCg > 1:22555792/1‑68 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccag < 1:8839483‑M1/68‑61 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:22231069‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:18590600‑M1/1‑8 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:27858918‑M1/68‑1 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:32675088‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:3441961‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:27338489‑M1/1‑67 (MQ=255) ggCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagca > 1:11167223‑M1/1‑6 (MQ=255) gCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat > 1:3406228‑M1/1‑5 (MQ=255) gCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat > 1:5895397‑M1/1‑5 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:15360459‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:10044442‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:29165193‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagca < 1:11778467‑M1/66‑63 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagc < 1:15642690‑M1/65‑62 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagc > 1:13993745‑M2/1‑40 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:3895884‑M1/68‑66 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt > 1:30733781‑M1/1‑3 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt > 1:9352645‑M1/1‑3 (MQ=255) gggATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcagcagcagttccagcatgt > 1:3774013‑M2/1‑48 (MQ=255) GGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg > 1:33105948‑M1/1‑67 (MQ=255) GGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg > 1:25483284‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:34251899‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:2103129‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:26225904‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:26427010‑M1/1‑67 (MQ=255) | TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |