| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3385586 | 174 (0.420) | 11 (0.030) | 7/98 | NT | 6.7% | noncoding (152/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | = 3385603 | NA (NA) | noncoding (169/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
Only 100 of 308 total aligned reads displayed.
CAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGG > CP009273/3385519‑3385653 | cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT > 1:10595016‑M1/1‑68 (MQ=255)cAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTAATGTTCCGTTTGTAGGCCTGAT > 1:14590140‑M1/1‑68 (MQ=255) gacGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT < 1:7264000‑M1/66‑1 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT < 1:23470437‑M1/67‑1 (MQ=255) aaCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAT < 1:20183137‑M1/67‑1 (MQ=255) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATat < 1:3774771/68‑2 (MQ=25) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:13589165/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:16929392/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:16399430/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:15679462/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:19199401/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:34035984/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:32919314/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:21926852/68‑1 (MQ=35) aCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:6192454/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:20757126/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:14425505/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:34487506/68‑1 (MQ=35) ggCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:27684191/68‑1 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:34340907/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:17725056/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:25301349/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:28382646/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:12360877/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:5706316/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:11157406/1‑68 (MQ=35) gCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:5315178/1‑68 (MQ=35) cTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc < 1:16798298/67‑1 (MQ=35) cTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc < 1:19053654/67‑1 (MQ=35) tGTCGTATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:23672111/68‑1 (MQ=25) tGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:30920674/68‑1 (MQ=35) gTCTGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATgcgacgct < 1:19385754‑M1/68‑9 (MQ=255) gTTATGTTCCGTTTGTAGGCCTGATgcgacgctgtgcgtcttatcaggcctacaagcggaacataacc > 1:19771065‑M1/1‑25 (MQ=255) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:21078321/1‑68 (MQ=33) tGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:17222439/1‑68 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:20098663/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:22706094/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:8165341/1‑67 (MQ=33) gTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaa > 1:15425218/1‑67 (MQ=33) tCCGTTTGTAGGCCTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtc > 1:28130064‑M1/1‑18 (MQ=255) tCCGTTTGTAGGCCTGATAAGACGCACAGCTTCGCATCAGGCAACCGCTGCCGGATGCGGCCTAAAc > 1:31860063/1‑67 (MQ=11) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:25717865/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:8994009/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:8628927/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:29679506/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:30878315/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:24163359/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:31580726/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:13120802/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:14199007/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAAc > 1:15988849/1‑67 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:31916583/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:32482417/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:4740785/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:10212963/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:26019946/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:10678426/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:23314936/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:2222566/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:11840965/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg < 1:12976862/68‑1 (MQ=35) tCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGCATGCGGCGTAAAc > 1:24450191/1‑67 (MQ=25) ccGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGc < 1:31702215/68‑1 (MQ=35) cGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACg > 1:32016055/1‑66 (MQ=35) ttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTa > 1:7889043/1‑68 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:26867879/1‑67 (MQ=35) ggCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCGTATCCg > 1:2660643/1‑67 (MQ=25) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:28860089/1‑67 (MQ=35) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcgggtaaggcgtt > 1:116593‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:18672227‑M1/1‑6 (MQ=255) ccTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:9342945‑M1/1‑6 (MQ=255) ccTGATgcgaagctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtt > 1:4227705‑M1/1‑6 (MQ=255) ccTGATAAGACGCCCAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:22365048/66‑1 (MQ=255) ccTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:21616613/67‑1 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:30979100/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:1001997/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:23518536/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:30604297/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:30349906/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:3228429/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:31149965/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:33819451/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:2130122/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:17420136/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:15058439/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:29881599/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:30481770/67‑1 (MQ=35) cTGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:28673622‑M1/1‑5 (MQ=255) tGATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgttt > 1:5974927‑M1/1‑4 (MQ=255) gATgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtcggtcggataaggcgtttac > 1:9591063‑M1/1‑3 (MQ=255) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 1:24548564/68‑1 (MQ=35) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 1:15884218/68‑1 (MQ=35) aTgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttac > 1:33009260‑M1/1‑2 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:5468675‑M1/1‑1 (MQ=255) tgcgacgctgtgcgtcttatcaggcctacaaacggaacataaccgtaggtcggataaggcgtttacg > 1:26408070‑M1/1‑1 (MQ=255) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:6982885/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:7183528/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:13684107/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:11516220/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:22880752/67‑1 (MQ=35) | CAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGG > CP009273/3385519‑3385653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |