| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 340 (0.820) | 257 (0.830) +CTGATCAGTGAATT |
18/84 | NT | 49.6% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 355 (0.860) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 642 total aligned reads displayed.
GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCA > CP009273/561498‑561630 | cgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGc > 1:33251754/1‑67 (MQ=255) cgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCt < 1:15088512/68‑1 (MQ=255) aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTccc < 1:26599930/68‑1 (MQ=255) aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTccc < 1:28798874/68‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:6953597/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:13236092/1‑68 (MQ=255) gCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACaaaa < 1:24611429/68‑1 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt < 1:30530029/68‑1 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt < 1:14092666/68‑1 (MQ=255) tgtgAGGTACCGGTATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAttt < 1:34159427/68‑1 (MQ=255) gtgAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTc > 1:33059757/1‑68 (MQ=255) gcctaccCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:29495710‑M2/4‑40 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:14741070/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:17141832/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:18337866/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:8394726/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:12711468/1‑68 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:5830777‑M2/65‑29 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:211758‑M2/65‑29 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:32277848‑M2/65‑29 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:29295286‑M2/1‑37 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:22613869‑M2/1‑37 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:31176965‑M2/1‑37 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:20617070‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:11430877‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:27751071‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg < 1:7086953/68‑1 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:9459127‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg > 1:7932233/1‑67 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg > 1:12022551/1‑67 (MQ=255) cGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg > 1:19961199/1‑66 (MQ=255) ggATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgaga > 1:27511301‑M2/1‑32 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTccc < 1:30180048/37‑1 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:18981557/1‑68 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:8912610/1‑68 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:28357246/1‑68 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:6689439‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:10199759‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:21845583‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:23484308‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:23904890‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:2087654‑M2/1‑30 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:31990675‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:2581825‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:20267957‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactcatcagtgataagctgtcaaacatgagaat < 1:19813101‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattaactgatcagtgataagctgtcaaacatgagaat < 1:2973605‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg > 1:2297197/1‑67 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg > 1:4892829/1‑67 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt < 1:18671239/68‑1 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:11175722‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:13764766‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:17655394‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:25299819/1‑67 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:19402089/1‑67 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:32445226/1‑67 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTcc < 1:29884758/68‑1 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat > 1:7780027‑M2/1‑25 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:3588224‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:17954131‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:33682724‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:9804034‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:14502524‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:863059‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:24143523‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:21660185‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:27087442‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAGATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:16427746/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATAC‑AAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:10479321/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:9020009‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:24781793‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:31720907‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:32824530‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:22354876‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:24363331/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:12902355/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:25973658/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:4714327/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:4388972/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:16670456/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTACAGCCAGAGCCTAGTCCAttt > 1:7420531/1‑68 (MQ=255) ggATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCg > 1:6159092/1‑68 (MQ=255) ggATGCGTCATCGCCATTGCTCCCAAAATAAAAAACCAATTTCAGCCAGTCCCTCGTCCATTTTTTCg > 1:8203470/1‑68 (MQ=255) gATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGa > 1:2616666/1‑68 (MQ=255) tGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATg > 1:15350666/1‑68 (MQ=255) cGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGAGGa > 1:20767119/1‑67 (MQ=255) tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATTAAc > 1:21911305/1‑67 (MQ=255) tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAAc > 1:4144974/1‑67 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:28936154/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:18124877/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:25586590/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:11813475/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:12282084/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:10006519/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:5558526/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt > 1:5268666/1‑67 (MQ=255) gCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGc > 1:26879226/1‑68 (MQ=255) ccATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGc > 1:21434811/1‑67 (MQ=255) ccATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGc > 1:15986287/1‑67 (MQ=255) aTTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCAcc < 1:28011128/68‑1 (MQ=255) | GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCA > CP009273/561498‑561630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |