New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1092806 =NA (NA)8 (0.020) 5/106 NT NA intergenic (+521/+215) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 1093009 = NA (NA)intergenic (+724/+12) ycdU/serX putative inner membrane protein/tRNA‑Ser

Only 100 of 179 total aligned reads displayed.

ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC  >  CP009273/1092973‑1093058
                                    |                                                 
atatACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:2388544/1‑68 (MQ=14)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:20264866/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:20010509/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:18343534/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:33566352/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:16838920/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:16063184/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:31680908/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:7118710/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:7475836/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:28806218/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:9851549/1‑68 (MQ=31)
atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTGGTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:2241086/1‑68 (MQ=255)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTGTTGTTTAAATATGGCGGTGAGGGGGGGATTCgc                  >  1:6060800/1‑67 (MQ=11)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTcac                  >  1:12605398/1‑66 (MQ=14)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:33619216/1‑66 (MQ=31)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTc                    >  1:2122916/1‑66 (MQ=31)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCgc                  >  1:17950503/1‑67 (MQ=18)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCgc                  >  1:5850767/1‑67 (MQ=18)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:22766109/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:24707225/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:8956696/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:2218229/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:8693857/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:26309283/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:28435497/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:27426090/1‑68 (MQ=35)
  ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                  >  1:14228697/1‑68 (MQ=35)
    aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                 >  1:16692424/1‑67 (MQ=37)
    aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                 >  1:4711760/1‑67 (MQ=37)
    aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCCaa                 >  1:23900871/1‑67 (MQ=14)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATTTGGCGGTGAGGGGGGGATTCGAAcc               <  1:8357281/68‑1 (MQ=255)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc               <  1:26905407/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc               <  1:10098536/68‑1 (MQ=40)
     cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc               <  1:4384020/68‑1 (MQ=40)
     acgaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAc                >  1:26720774/4‑67 (MQ=255)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              <  1:34100144/68‑1 (MQ=40)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              <  1:22488974/68‑1 (MQ=40)
      gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              <  1:16425124/68‑1 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGCAccc              >  1:26879608/1‑67 (MQ=255)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              >  1:547830/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              >  1:20638952/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              >  1:15218842/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              >  1:1485331/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc              >  1:25115934/1‑67 (MQ=40)
       aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTAAGGGGGGGATTCGAAccc              >  1:30317456/1‑67 (MQ=255)
       aaaaaaaaCCCCTTACTTTGGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc             <  1:216000/68‑1 (MQ=14)
        tcaaaaaGCCCCACCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc             <  1:32280762/65‑1 (MQ=11)
        aaagaaagCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc            <  1:14978296/68‑1 (MQ=255)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc            >  1:2827153/1‑68 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc             <  1:33051334/67‑1 (MQ=40)
        aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAAcccc             <  1:25214411/67‑1 (MQ=255)
         aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg           >  1:3569513/1‑68 (MQ=40)
         aaaaaaGCCCGTACTTTCGTACGAGCTCTCCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg           >  1:12454955/1‑68 (MQ=255)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         <  1:28980514/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         <  1:13040894/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         >  1:32302539/1‑68 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         <  1:16176511/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         <  1:12772952/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         <  1:16865691/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt         <  1:12113571/68‑1 (MQ=40)
           aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGGATTCGAACCCCCGAt         <  1:13449710/68‑1 (MQ=255)
             aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc       <  1:10280392/68‑1 (MQ=40)
             aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc       <  1:23011603/68‑1 (MQ=40)
              aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg      >  1:10393219/1‑68 (MQ=40)
              aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg      <  1:10966856/68‑1 (MQ=40)
              aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg      >  1:11880635/1‑68 (MQ=40)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGCACCCCCGATACGtt    >  1:8370705/1‑68 (MQ=255)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:25124326/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:805327/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:19272924/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:34335810/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:20258250/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:30361711/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:30651877/1‑68 (MQ=39)
                cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    >  1:30692848/1‑68 (MQ=39)
                 ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    <  1:12304726/67‑1 (MQ=37)
                 ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    <  1:24128854/67‑1 (MQ=37)
                 ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt    <  1:15582/67‑1 (MQ=37)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:18550662/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:2834924/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:29087198/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:24238786/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:13844106/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:7276586/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:14740972/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:6757252/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:17118365/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:17303404/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:23542406/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:4595000/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:387220/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:19691040/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:354401/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:3141189/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:20409357/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:21629612/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:22478374/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:32486491/68‑1 (MQ=35)
                  cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc  <  1:31747076/68‑1 (MQ=35)
                                    |                                                 
ATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGC  >  CP009273/1092973‑1093058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.