| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 301 (0.730) | 103 (0.350) | 30/80 | NT | 36.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 137 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
Only 100 of 432 total aligned reads displayed.
GGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT > CP009273/1205008‑1205142 | ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCccaacccaac > 1:25409575/1‑68 (MQ=255)gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac > 1:20726979‑M2/68‑68 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:27907444‑M2/1‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:19967469‑M2/1‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:17801568‑M2/1‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCg < 1:9396861‑M2/2‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCg < 1:18957423‑M2/2‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt > 1:17292710‑M2/66‑68 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt < 1:16940165/67‑1 (MQ=255) gAGTGGCTGAAGGCTACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 1:9542382/1‑68 (MQ=255) gAGTGGCTGAAGGCCACGTAACCTGGACACCAACAGGTAAAGCACAGCCTTCTCCCAAACCAACGatt > 1:4786119/1‑68 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg > 1:22179803‑M2/61‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 1:23740104‑M2/60‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 1:28198507‑M2/60‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 1:28597630‑M2/60‑68 (MQ=255) gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag < 1:7494379‑M2/17‑1 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:22836583/1‑68 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:2129521/1‑68 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:12850952/1‑68 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGaaa > 1:8775788/1‑68 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:21746775‑M2/21‑1 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:11349604‑M2/21‑1 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:23069564‑M2/45‑68 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:15523534‑M2/45‑68 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:10110381‑M2/45‑68 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:9137296‑M2/45‑68 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa < 1:14607754‑M2/25‑1 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 1:7691931‑M2/44‑68 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 1:28755162‑M2/44‑68 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 1:34018770‑M2/44‑68 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa > 1:4174078/1‑68 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa > 1:15066650/1‑67 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:11854122‑M2/40‑68 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 1:27455523‑M2/40‑68 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa > 1:23605271/1‑68 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCa < 1:18773255/67‑1 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg > 1:32694894/1‑68 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg > 1:17398602‑M2/35‑67 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:29586461/68‑1 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 1:19361255/68‑1 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca < 1:14093791‑M2/39‑1 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:13318604‑M2/30‑68 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:13692382‑M2/40‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:15803477‑M2/40‑1 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:32163780‑M2/41‑1 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:24308641/1‑67 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:10414177/1‑67 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:22297135/1‑67 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca < 1:18522667/65‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:846321/67‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:6435692/67‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:26256941/67‑1 (MQ=255) gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:3895716‑M2/25‑65 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:4373380/1‑67 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:1959005/1‑67 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:5742805‑M2/46‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGATGAAATAACAAGCAAATGGCATCATTCCt > 1:29170026/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:6159857/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:10764010/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:16062131/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:8323491/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:19893031/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:29489009/1‑66 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:33163026/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:12644371/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:11743058/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:10542398/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:24853041/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:24685349/68‑1 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCt > 1:31935908/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:26544276/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:24036344/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:3628541/1‑68 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:68573/1‑68 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:16460377/1‑68 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:2270112/1‑68 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt > 1:32526455/1‑67 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGATGAAATAACAAGCAATTGGCATCATTCCTGCTTTTa > 1:30994265‑M2/17‑67 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:20293956‑M2/51‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:30352656‑M2/51‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:34389232‑M2/11‑68 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:7233394‑M2/11‑68 (MQ=255) ccaaaccaaCGTTTATGAAATTGAAGAAATAACAAGCATATGGCATCATTCCTGCTTTTACCAggggg < 1:2257884‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:31338818‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATTCCTGCTTTTACAAggggg > 1:31641522‑M2/10‑68 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:498701‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:17212149‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:25858110‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:11200445‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:26007679‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:29833934‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:30130496‑M2/60‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:26688487‑M2/7‑68 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt < 1:887613‑M2/62‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:18173481‑M2/6‑68 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:1220299‑M2/63‑1 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:7914890‑M2/6‑68 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:29723391‑M2/63‑1 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAAAAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa > 1:15294294‑M2/5‑68 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:20831153‑M2/65‑1 (MQ=255) | GGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT > CP009273/1205008‑1205142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |