New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1871532333 (0.800)21 (0.060) 6/96 NT 7.1% intergenic (+19/+3) yeaO/yoaF DUF488 family protein/DUF333 family outer membrane lipoprotein
?CP009273 = 1871547 264 (0.740)coding (243/255 nt) yoaF DUF333 family outer membrane lipoprotein

Only 100 of 369 total aligned reads displayed.

GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612
                                                                   |                                                                 
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:9775566/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:31664838/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:29802264/1‑68 (MQ=255)
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:20265927/1‑68 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:6110301‑M2/1‑66 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:3425294‑M2/1‑66 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:3526319‑M2/1‑66 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAg                                                                  >  1:12887054‑M2/1‑66 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                <  1:5554223‑M2/68‑4 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                >  1:11842146‑M2/1‑65 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                >  1:33913489‑M2/1‑65 (MQ=255)
        tGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggat                                                            >  1:13553036‑M2/1‑60 (MQ=255)
        tGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggat                                                            >  1:13999843‑M2/1‑60 (MQ=255)
        tGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggat                                                            >  1:14197039‑M2/1‑60 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:7552560/1‑68 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:21605317/1‑68 (MQ=255)
           ccGACTGCCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:5467209/1‑68 (MQ=255)
            cGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgt                                                       >  1:26318114‑M2/1‑56 (MQ=255)
            cGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgt                                                       >  1:27870687‑M2/1‑56 (MQ=255)
             gACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCTGGCGGTTATTTTTCACCAgccggatgctgta                                                      >  1:4990522‑M2/1‑55 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:24193169/67‑1 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:30847661/67‑1 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCAACCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:21382399/67‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:15894634/68‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:22140026/68‑1 (MQ=255)
                  gCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgccg                                                  >  1:16800277/1‑67 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:33421950/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:14676854/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:652223/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:33679905/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:21890082/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:20582606/68‑1 (MQ=255)
                       gTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACaa                                            >  1:9434978/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:16332077/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:17268914/1‑68 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcaca                                           >  1:12299951‑M2/1‑43 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:23076073/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           <  1:10288878/67‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:21084477/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:19163820/1‑67 (MQ=255)
                          gCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          >  1:24280199/1‑67 (MQ=255)
                           cTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         >  1:3902612/1‑67 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:26764183‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGccc                                       <  1:19581565/68‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGccc                                       >  1:29941813/1‑68 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGcc                                        <  1:24746698/67‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:15055806/66‑1 (MQ=255)
                             tgtgATTTTAGTCCCGCATCCGGCGGGTATTTTTCACCAgccggatgctgtactaaaatcacaagcta                                      >  1:18150653‑M2/1‑39 (MQ=255)
                             tgtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagcta                                      >  1:25767565‑M2/1‑39 (MQ=255)
                             ggtgaTTTTAGTACAGCATCCGGCGGTTATTTATCACCAgccggatgctgtactaaaatcacaagcta                                      >  1:27706097‑M2/2‑39 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:8092347/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:3306317/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:29137531/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:18499882/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:25304757/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:25166422/67‑1 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:18807130/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:8915846/1‑68 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:936246/67‑1 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:31056334/67‑1 (MQ=255)
                                         agaGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          <  1:15445107/66‑1 (MQ=255)
                                         aCAGCATGCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          <  1:28790357/68‑1 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATc                            <  1:12663054/66‑1 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATc                            <  1:32400198/66‑1 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATc                            <  1:17653630/66‑1 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:11286124/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:11584145/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:19454957/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:2833257/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:18900559/1‑68 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:13363835/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:30619630/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:30296817/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:6836265/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:22621012/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:25209102/1‑67 (MQ=255)
                                            gCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTc                       >  1:7435264/1‑68 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:31464035/1‑67 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:30536675/1‑67 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:13001321/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:12015904/68‑1 (MQ=255)
                                                   gcggTTATTTTTCACCAgccggatgctgtactaaaatcacaagctacgtagccagtcggccagcacca                <  1:9628960‑M2/68‑52 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCCCGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:25821136/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:32595211/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:11193434/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:32131309/1‑68 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:11009832/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:23941622/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:30681474/67‑1 (MQ=255)
                                                        tATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTaa           <  1:925335/68‑1 (MQ=255)
                                                          tttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAtt         <  1:26591795/68‑1 (MQ=255)
                                                          tttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAtt         <  1:7072926/68‑1 (MQ=255)
                                                           ttttCACCTGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:20754060/68‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:12595243/68‑1 (MQ=255)
                                                           ttttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        <  1:4306956/68‑1 (MQ=255)
                                                            tttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAAttt        >  1:7005692/1‑67 (MQ=255)
                                                                aCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAt   <  1:8627801/68‑1 (MQ=255)
                                                                aCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAt   >  1:1488841/1‑68 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAtt  <  1:10048066/68‑1 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAAGCGTTTCACCGCCCGGTAATTTGCAAta  >  1:16718491/1‑67 (MQ=255)
                                                                   |                                                                 
GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.