| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2402276 | NA (NA) | 8 (0.020) | 4/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 358 total aligned reads displayed.
AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGA > CP009273/2402216‑2402350 | aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:10016498/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:6694380/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:6046738/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:31487004/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:24226729/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:3893921/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:18790972/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:5389733/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:15073241/1‑68 (MQ=255) gCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:18450124/1‑67 (MQ=255) cAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAt < 1:5901051‑M2/67‑2 (MQ=255) ttCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccggc < 1:4547055‑M2/68‑7 (MQ=255) ttCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccggc < 1:4795774‑M2/68‑7 (MQ=255) gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGc < 1:15320893/68‑1 (MQ=255) gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGc < 1:8470464/68‑1 (MQ=255) gcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGt > 1:659413/1‑68 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGcc > 1:33444516/1‑67 (MQ=255) cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCcac < 1:9012766/68‑1 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACaa > 1:13147610/1‑68 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATg > 1:30761388/1‑67 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:13609966/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:31732787/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:7852660/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:21192787/68‑1 (MQ=255) tcatcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa > 1:12335101/1‑66 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:14348712/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:33773770/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:25564172/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:12574211/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga > 1:34484495/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga < 1:15972007/68‑1 (MQ=255) gatGTAATCTTAATTTCACTGCAGGAGATTGCATCCGGCAGCGTTATCCCGCCACAAAGACCtgctga > 1:27682999/3‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:17311854/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:19059648/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:1681680/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATAGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:15173305/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGACGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:8825234/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataacc > 1:25020007‑M2/1‑31 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga < 1:22741626/66‑1 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:7012952/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg < 1:27126112/68‑1 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:16147863/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:11939656/1‑68 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccaga > 1:1355416‑M2/1‑28 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccaga > 1:2366194‑M2/1‑28 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:10824855/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:32684505/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:34251628/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc < 1:17998117/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc < 1:5632761/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:13191046/1‑68 (MQ=255) tAATTTGACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:1467920/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGGATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:24129088/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:17948882/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:3769481/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:15508170/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:28860503/68‑1 (MQ=255) aaTTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc < 1:28457280/68‑1 (MQ=255) aTTTCACTGCCTGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACg < 1:22179746/68‑1 (MQ=255) tttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGt > 1:19207473/1‑68 (MQ=255) tttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGt > 1:22232763/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:23924377/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:15787480/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg < 1:34114756/68‑1 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg < 1:27047578/68‑1 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:11510209/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:32334082/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg < 1:17584837/68‑1 (MQ=255) tGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTc > 1:30061663/1‑68 (MQ=255) gCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa < 1:20836523/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:33886162/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:6310228/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:4642493/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:30534963/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:29364141/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:26121876/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:25356709/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:8186240/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:23140454/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:2013407/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:19626096/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt > 1:16334401/1‑68 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:15649843/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1392802/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1285159/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACATAAGGTCACt < 1:7213478/68‑1 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt < 1:9433432/67‑1 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt < 1:960049/67‑1 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATg > 1:10440001/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTGTGaa > 1:31093254/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:33398002/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:32954959/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:32118143/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:7473204/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:21497277/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:20694234/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:18657038/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:11124819/1‑68 (MQ=255) aTCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACaga > 1:28067301/1‑68 (MQ=255) aTCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACaga > 1:24640737/1‑68 (MQ=255) | AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGA > CP009273/2402216‑2402350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |