New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =465 (1.120)48 (0.150) 11/88 NT 11.9% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 344 (1.060)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 931 total aligned reads displayed.

ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920752‑3920884
                                                                 |                                                                   
gcaccggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGa                                                                   <  1:33549685‑M2/3‑1 (MQ=255)
gcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccc                                                                     <  1:16538331‑M2/1‑1 (MQ=255)
aCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   <  1:27122574/68‑1 (MQ=255)
 ccTTAGGGCAACACGACTTCCGCGCTGGCGAACGGCTGTACACGAACATGAAAGCCCTACGcccc                                                                     <  1:27996135/65‑1 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGaa                                                                  >  1:31270409/1‑67 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:22063088/1‑68 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:24738501/1‑68 (MQ=255)
 caacggagacagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGa                                                                   <  1:5771727‑M2/3‑1 (MQ=255)
       ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCATTCGCCCCGATGAAGa                                                             >  1:13207665/1‑67 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:9321649/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:24498174/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:6475745/1‑68 (MQ=255)
          aagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGt                                                         <  1:15090823‑M2/13‑1 (MQ=255)
          aaCACGACTTCAGCGCGGGCGAATGGCTGTACACTCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:15216962/68‑1 (MQ=255)
          aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:6893459/68‑1 (MQ=255)
          aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:32887330/68‑1 (MQ=255)
          aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:8271112/68‑1 (MQ=255)
            gacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCt                                                       <  1:24299301‑M1/54‑1 (MQ=255)
             acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      >  1:10398930/1‑68 (MQ=255)
                  ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTcc                                                 >  1:8509679/1‑68 (MQ=255)
                  ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTcc                                                 <  1:23076800/68‑1 (MQ=255)
                       tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTg                                             <  1:15784517‑M1/64‑1 (MQ=255)
                       tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            <  1:25625615‑M1/65‑1 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:28459102/1‑68 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:10845918/1‑68 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:7341182/1‑68 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:30084398/1‑68 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:29089466/1‑68 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:25389468/1‑68 (MQ=255)
                       cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:1923396/1‑68 (MQ=255)
                        gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:10018882/1‑67 (MQ=255)
                         gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            <  1:28668293‑M1/65‑1 (MQ=255)
                             CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:33944875‑M1/1‑67 (MQ=255)
                             CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:17111308‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:6149000‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:30162658‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:30659452‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:4301465‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:3479783‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:22397047‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:27438357‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:12060242‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:20467138‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:20156804‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:12209913‑M1/1‑67 (MQ=255)
                                AGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCCCTCGGTCt                                   <  1:5310451‑M1/68‑1 (MQ=255)
                                  GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:11098278‑M1/68‑1 (MQ=255)
                                  GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:18953054‑M1/68‑1 (MQ=255)
                                  GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGACTAt                                 <  1:17306671‑M1/68‑1 (MQ=255)
                                  GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTATCTCCGTTGCACTCGGTCTAt                                 <  1:14502239‑M1/68‑1 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:23335402‑M1/1‑67 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:25895868‑M1/1‑67 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:1277154‑M1/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:7863143/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:16469814/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:30888345/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:18283006/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:19598589/1‑67 (MQ=255)
                                         cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          >  1:11375935/1‑68 (MQ=255)
                                         cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGGCTATGTTGAcc                          >  1:13939583/1‑68 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         >  1:4041181/1‑68 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:31735533/68‑1 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:8111240/68‑1 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGGCTATGTTGACCa                         <  1:10166458/68‑1 (MQ=255)
                                           cGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAg                        >  1:32174159/1‑68 (MQ=255)
                                            gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:27643585/68‑1 (MQ=255)
                                            gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:12482795/68‑1 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:23751444/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAggg                      >  1:32580515/1‑66 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:15443064/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:21791552/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:17711998/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:1806845/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:19839034/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:31536558/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:22856029/1‑68 (MQ=255)
                                               caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    >  1:1597356/1‑68 (MQ=255)
                                               caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    >  1:16213137/1‑68 (MQ=255)
                                               caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    <  1:21499167/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCTATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:25146818/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:3797596/49‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:3301349/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:32337760/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:29837021/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:9085270/68‑1 (MQ=255)
                                                 ctaccgccctcCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:34289183‑M2/56‑1 (MQ=255)
                                                  gAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTTGGTCTATGTTGACCAGTggg                    >  1:4649533/1‑65 (MQ=255)
                                                    aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               <  1:13469456/68‑1 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:4979826‑M2/12‑68 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:2647442‑M2/12‑68 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:21202618‑M2/12‑68 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:18628748‑M2/12‑68 (MQ=255)
                                                        ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:1488413‑M2/10‑68 (MQ=255)
                                                         cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:14372389‑M2/60‑1 (MQ=255)
                                                           tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:24053354‑M2/62‑1 (MQ=255)
                                                           tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:26770125‑M2/62‑1 (MQ=255)
                                                             gcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTa      <  1:7596820‑M2/64‑1 (MQ=255)
                                                              cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:11745557‑M2/4‑68 (MQ=255)
                                                              cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:9701564‑M2/4‑68 (MQ=255)
                                                                 cGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTATTgg  <  1:29585346/68‑1 (MQ=255)
                                                                 |                                                                   
ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920752‑3920884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.