| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4061067 = | 496 (1.200) | 25 (0.070) | 8/94 | NT | 6.5% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 308 (0.880) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
Only 100 of 711 total aligned reads displayed.
GGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCAGC > CP009273/4061028‑4061161 | gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:17432108/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:18733627/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:8690699/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:21586355/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:34197182/1‑68 (MQ=255)gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCAACAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:32165467/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:17952694/1‑68 (MQ=255) accgacattggcggttacaccaccctgattgagatgaagcgcagcaaagagctgctgctgcgctTCAt < 1:34477841‑M2/4‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:14153795/1‑66 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:4192371/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:25279368/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:23522493/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:21995953/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:7960910/67‑1 (MQ=255) ggcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:31924665/66‑1 (MQ=255) gacattggcggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCAt < 1:32896800‑M2/4‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:6325532/68‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:25997436/68‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:8834575/68‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:9662798/68‑1 (MQ=255) cattggcggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCaa < 1:10454747‑M2/9‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCTGCTCTTTGCTGCGCTTCATCTCaa > 1:32512023/1‑67 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:5873029/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa > 1:3890384/1‑67 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:1000475/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:17172339/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa > 1:29501618/1‑67 (MQ=255) tcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAAc < 1:2986030/68‑1 (MQ=255) tcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAAc < 1:29049519/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACGAGCGCATCTGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:33763160/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:30027051/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:27629863/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:26283468/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:12094138/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:24971531/68‑1 (MQ=255) cggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCAAACAgg < 1:15956196‑M2/14‑1 (MQ=255) cggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCAAACAgg < 1:27851030‑M2/14‑1 (MQ=255) cggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCAAACAgg < 1:26729587‑M2/14‑1 (MQ=255) cggtaacaccaccctgtttgagaagaagcgcagcaaagagctgctgctgcgctTCATCTCAAACAgg < 1:25710167‑M2/14‑1 (MQ=255) ggttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCAAACAGggt < 1:20174724‑M2/16‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt < 1:5263898/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:34033756/1‑68 (MQ=255) ttacaccaccctgtttgagatgaagcgcagcaaagagctgctgctgcgctTCATCTCAAACAGggtg < 1:13314512‑M2/17‑1 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:1620282/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtg < 1:1542147/67‑1 (MQ=255) gTGAATGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:14916079/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCGAACAGggtggt > 1:11514641/1‑68 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:10723184/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg < 1:27423243/67‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg < 1:16578821/67‑1 (MQ=255) gAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGgtgt < 1:28305719/68‑1 (MQ=255) aGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTa > 1:22507770/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:24533080/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:23768464/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:12833746/1‑67 (MQ=255) cgcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAAcc < 1:7313426/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:12378727/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:466440/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:10226459/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:22844191/67‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:28062111‑M1/53‑1 (MQ=255) ttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:14793917‑M1/59‑1 (MQ=255) ttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:1995562‑M1/59‑1 (MQ=255) aaTCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAAt < 1:16988298/67‑1 (MQ=255) aaTCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:11299311/68‑1 (MQ=255) tCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:4456383/68‑1 (MQ=255) cGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc > 1:3684766/1‑67 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:24131361/68‑1 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCTATGTCGCTgtggt > 1:721405‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:16791206‑M1/1‑66 (MQ=255) GCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtgg > 1:28603111‑M1/1‑65 (MQ=255) GCAGCAGCAGCTCCTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTgtggt > 1:8111212‑M1/1‑66 (MQ=255) ccaacgagccgccgctgcgctTCACCTCAAACAGGGTGGTGAAACCGCCAATGTCGCTGTGGTGCAgg < 1:7508908‑M2/47‑1 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:13075484‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:31688348‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:11755240‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:30363085‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:6738971‑M1/1‑66 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGcc < 1:33473266‑M1/68‑1 (MQ=255) AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGGGGTGTAACCGCCAATGTCGCTGTGGTGCAgg > 1:31232760‑M1/1‑66 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATg < 1:2058706/65‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATg < 1:30663209/65‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATg < 1:1580781/65‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGt < 1:7737371/66‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGt < 1:19550895/66‑1 (MQ=255) tctTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTcc > 1:24318710/1‑68 (MQ=255) tttGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCgg > 1:6504369/1‑68 (MQ=255) ttGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGt < 1:9149571/68‑1 (MQ=255) gctgcgctTCATCTCAAACAGGGTGTTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:13874887‑M2/9‑68 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:14418632‑M2/9‑68 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:23121767‑M2/9‑68 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:11098425‑M2/9‑68 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:8384875‑M2/9‑68 (MQ=255) gctgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCa > 1:9431282‑M2/9‑68 (MQ=255) tgcgctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCAtt > 1:27039400‑M2/7‑68 (MQ=255) tgcgctTCATCTCAAACAGGGGGGGGTACCCGCCAATGGCGCTGTGGTGCAGGCCATGTCCGGTCAt < 1:30899640‑M2/61‑1 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTTGTGCAGGCCATGTCCGGTCATTGcc > 1:22248065‑M2/4‑68 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGcc > 1:19261637‑M2/4‑68 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGc < 1:21156597‑M2/64‑1 (MQ=255) gctTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGc < 1:15152149‑M2/64‑1 (MQ=255) | GGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGGTGCAGGCCATGTCCGGTCATTGCCAGC > CP009273/4061028‑4061161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |