Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 246554 247261 708 132 [122] [127] 135 [lfhA]–[lafU] [lfhA],[lafU]

Only 100 of 132 total aligned reads displayed.

GGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246486‑246599
                                                                   |                                              
ggTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                >  1:12036504/1‑68 (MQ=255)
ggTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                >  1:7965703/1‑68 (MQ=255)
 gTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                >  1:15689886/1‑67 (MQ=255)
  tAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                <  1:398983/66‑1 (MQ=255)
  tAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                <  1:15561487/66‑1 (MQ=255)
  tAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                <  1:21263726/66‑1 (MQ=255)
  tAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCa                                                <  1:25734227/66‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:6447156/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:5663706/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           >  1:32121493/1‑68 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:25130187/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:14224296/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:10990745/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:21083925/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:15154715/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           >  1:1089399/1‑68 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           <  1:32703198/68‑1 (MQ=255)
     aGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGc                                           >  1:2022591/1‑68 (MQ=255)
      gCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCg                                          >  1:18575782/1‑68 (MQ=255)
       cGGTCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAACTTGATTGTCAACAGCg                                          >  1:21908947/1‑67 (MQ=255)
       cGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCg                                          >  1:15678643/1‑67 (MQ=255)
       cGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCg                                          >  1:29286691/1‑67 (MQ=255)
        gggCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCg                                          <  1:25672354/66‑1 (MQ=255)
        gggCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCg                                          <  1:23701286/66‑1 (MQ=255)
        gggCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCg                                          <  1:29921403/66‑1 (MQ=255)
        gggCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTc                                        <  1:3384054/68‑1 (MQ=255)
        gggCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTc                                        <  1:24044813/68‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:31979110/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:14813203/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:33594750/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:29821628/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:8337645/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:8979030/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:24173620/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:22552478/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:24138429/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:27619996/67‑1 (MQ=255)
          gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:2313713/67‑1 (MQ=255)
            aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:1075433/67‑1 (MQ=255)
            aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:33357050/67‑1 (MQ=255)
            aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:26403196/67‑1 (MQ=255)
            aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:19768319/67‑1 (MQ=255)
               atccTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:27428462/66‑1 (MQ=255)
               aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTTATTGTCAACAGCGTCAGTAAAt                                 <  1:32503253/68‑1 (MQ=255)
               aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTaa                                   <  1:19496159/66‑1 (MQ=255)
               aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:28120728/68‑1 (MQ=255)
               aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:11578459/68‑1 (MQ=255)
               aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:815355/68‑1 (MQ=255)
               aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:5178131/68‑1 (MQ=255)
                aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:2305288/1‑67 (MQ=255)
                    cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:27603390/68‑1 (MQ=255)
                    cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:16699041/68‑1 (MQ=255)
                       aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:7325120/67‑1 (MQ=255)
                       aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:21336905/67‑1 (MQ=255)
                       aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:3437130/67‑1 (MQ=255)
                       aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:31029600/67‑1 (MQ=255)
                        aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:21490086/68‑1 (MQ=255)
                        aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:18611297/1‑68 (MQ=255)
                          tACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaa                      <  1:32435280/68‑1 (MQ=255)
                             gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:7733076/1‑68 (MQ=255)
                             gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:10819301/1‑68 (MQ=255)
                             gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:13645189/1‑68 (MQ=255)
                             gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:31209855/1‑68 (MQ=255)
                             gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:30371927/1‑68 (MQ=255)
                               tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGGGCGTGAAAGCa                  <  1:22699828/67‑1 (MQ=255)
                               tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:12653313/67‑1 (MQ=255)
                               tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:5592726/67‑1 (MQ=255)
                               tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:4680548/67‑1 (MQ=255)
                               tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:14005549/67‑1 (MQ=255)
                               tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTAAACAGCGGCAGTAAATCCGCGCGTGAAAGCa                  <  1:8857502/67‑1 (MQ=255)
                               gcGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:19470774/66‑1 (MQ=255)
                                   ccccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             >  1:13057283/1‑68 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:21853587/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:6006132/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:1281118/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:7501500/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:5100486/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:15104628/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:2957901/68‑1 (MQ=255)
                                        ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:30802092/68‑1 (MQ=255)
                                         tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:17675311/1‑67 (MQ=255)
                                            tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:31892907/1‑67 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGATAGCATTATCGCCGCGCtat   <  1:16579949/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:22442342/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:1257205/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:25342098/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:2435776/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:25772946/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:7068574/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:8794427/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:5651909/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:5512237/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:26992589/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:4153531/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:27185398/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:28818001/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:31490305/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:18421085/68‑3 (MQ=255)
                                             gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:30595754/68‑3 (MQ=255)
                                               cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:28589854/67‑4 (MQ=255)
                                                                   |                                              
GGTAAAGCGGGCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246486‑246599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑