| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 66,706 | T→C | 66.8% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 66,706 | 0 | T | C | 66.8% | 1603.3 / inf | 1333 | intergenic (‑174/‑168) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| Reads supporting (aligned to +/- strand): ref base T (269/172); new base C (517/372); total (789/544) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.34e-01 | |||||||||||
Only 100 of 1339 total aligned reads displayed.
ATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCG > CP009273/66639‑66772 | cAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAc > 1:14830661/1‑67 (MQ=255) cAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAc > 1:31148417/1‑67 (MQ=255) cAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAc > 1:25763127/1‑67 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAcgc > 1:11450365/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAcgc > 1:22930252/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAcgc > 1:22218074/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:27283920/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:17529128/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:11750484/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:12295052/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:34334368/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc < 1:32141719/68‑1 (MQ=255) aGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGt < 1:16062207/68‑1 (MQ=255) aGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGt > 1:2752721/1‑68 (MQ=255) tgtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGttt > 1:31437816/1‑68 (MQ=255) tgtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGttt > 1:9215026/1‑68 (MQ=255) tgtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGttt > 1:20719928/1‑68 (MQ=255) aCGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGt > 1:14040522/1‑68 (MQ=255) cGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGt < 1:4980806/67‑1 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:18279943/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:13687995/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:14475937/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:25146570/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:18622941/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:23544740/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:28871190/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:7334648/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:30532735/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:29529560/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:9465133/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:29897829/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:8179903/1‑68 (MQ=255) gTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATgg < 1:6437622/68‑1 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGcc < 1:4029095/68‑2 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGcc < 1:3378691/68‑2 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGc < 1:9742568/67‑1 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGc < 1:26131684/67‑1 (MQ=255) aataatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTg > 1:4602677/1‑68 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTgg > 1:3726574/1‑67 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTgg > 1:5957416/1‑67 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGt < 1:31777890/68‑1 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGt < 1:17199610/68‑1 (MQ=255) tCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTccc > 1:8940321/1‑68 (MQ=255) tCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTccc > 1:24550820/1‑68 (MQ=255) tCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTccc < 1:19734627/68‑1 (MQ=255) aTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCt < 1:28297905/68‑1 (MQ=255) aTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCt < 1:15667292/68‑1 (MQ=255) tgtgGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCtt > 1:10932086/1‑68 (MQ=255) tgtgGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCtt > 1:5561604/1‑68 (MQ=255) ttgGAGTTTTCTGCCGTGATTATAGACACTTTTGTTAGGCGTTTTTGTGATGGCTTTGGTCCCGCttt < 1:13176895/67‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCttt < 1:22432580/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCttt < 1:12670141/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCttt < 1:24375926/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCttt < 1:7486627/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCttt < 1:18000531/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCttt < 1:10297475/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCttt < 1:7015896/68‑1 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCttt < 1:23872644/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGt < 1:33455866/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:16673226/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:428888/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:7854262/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:30163218/68‑1 (MQ=255) gACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGtt > 1:23236009/1‑68 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGtt > 1:28583018/1‑67 (MQ=255) cTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTAc > 1:25436756/1‑68 (MQ=255) cTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTAc > 1:30839946/1‑68 (MQ=255) cTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTAc > 1:12893618/1‑68 (MQ=255) cTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTAc > 1:29233722/1‑68 (MQ=255) gCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAAt > 1:11944687/1‑66 (MQ=255) gCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATg > 1:6220492/1‑67 (MQ=255) gCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGc < 1:13446861/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:19291258/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:27710051/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:26563548/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:11266835/68‑1 (MQ=255) cGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCtt > 1:3533849/1‑68 (MQ=255) cGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCt < 1:19002255/67‑1 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCtt > 1:21738117/1‑68 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:21477642/67‑1 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:24925204/67‑1 (MQ=255) agTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCt < 1:20366484/66‑1 (MQ=255) ttATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCttt < 1:26361128/49‑1 (MQ=255) ttATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTtaat < 1:861115/68‑1 (MQ=255) tataGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTtaata < 1:15094722/68‑1 (MQ=255) tataGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTtaata < 1:34035430/68‑1 (MQ=255) gACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCg > 1:15518716/1‑68 (MQ=255) gACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCg > 1:1005071/1‑68 (MQ=255) gACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTACCGCTTTGTTACAGAATGCTTTTAATAAGCg > 1:32427885/1‑68 (MQ=255) gACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCg > 1:10625082/1‑68 (MQ=255) actcTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGATTTTAATAAGCgg > 1:20199769/4‑68 (MQ=255) acacTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:16450342/1‑68 (MQ=255) acacTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:27008293/1‑68 (MQ=255) acacTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:33050991/1‑68 (MQ=255) acacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:16939331/1‑68 (MQ=255) acacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:1839347/1‑68 (MQ=255) acacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:27991776/1‑68 (MQ=255) cacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCATTTAATAAGCggg > 1:21097929/1‑68 (MQ=255) acTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgggg < 1:32746600/68‑1 (MQ=255) acTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgggg > 1:24142610/1‑68 (MQ=255) | ATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCG > CP009273/66639‑66772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |