| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,268,331 | G→A | 8.6% | L123L (TTG→TTA) | chaC → | cation transport regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,268,331 | 0 | G | A | 8.6% | 1223.3 / 79.3 | 394 | L123L (TTG→TTA) | chaC | cation transport regulator |
| Reads supporting (aligned to +/- strand): ref base G (164/195); new base A (20/14); total (185/209) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 431 total aligned reads displayed.
CGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGAC > CP009273/1268265‑1268398 | aCGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTgg < 1:12045874/67‑1 (MQ=255) cGCACCACAGGCGTCGCCTATCGACTGGCAGAAGAGACGCTGGAGCAGGAACTAACCCGGTTGTGGaa > 1:13624148/1‑68 (MQ=255) gCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAg < 1:11301008/68‑1 (MQ=255) gCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAg < 1:32166085/68‑1 (MQ=255) gCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTATGGaa > 1:3668043/1‑67 (MQ=255) gCACCACAGGCGGCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAg < 1:23673505/68‑1 (MQ=255) caccacAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGTACTAACCCTGTTGTGGAAGc > 1:31108584/1‑68 (MQ=255) cacaGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCgag < 1:25684815/68‑1 (MQ=255) cacaGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCgag < 1:2687251/68‑1 (MQ=255) acaGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCgaga > 1:17708276/1‑68 (MQ=255) aGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTATGGAAGCgagaga > 1:13369512/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:26195746/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:32882434/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:4875243/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:33539045/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:6033018/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:9081463/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:9549122/1‑68 (MQ=255) ggCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:34055801/1‑68 (MQ=255) ggCGTCGCCTATCGACAGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgat > 1:25817713/1‑68 (MQ=255) cggcGCCTATCGACTGCCAGACGACACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCgagaga < 1:25606751/62‑1 (MQ=255) cggcGCCTATCGACTGCCAGAAGAGCCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCgagaga < 1:22904229/62‑1 (MQ=255) cGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTACCCCTGTTGTGGAAGCGAGAgatga > 1:31950786/1‑68 (MQ=255) cGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatga > 1:5558215/1‑68 (MQ=255) cGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatga > 1:21997844/1‑68 (MQ=255) cGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatga > 1:4531414/1‑68 (MQ=255) cGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatga > 1:12293712/1‑68 (MQ=255) cGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatga > 1:11594577/1‑68 (MQ=255) gTCGCCTATCGACTGCCAGAAGAGCCGCTGGAGCAGGAACTAACCCTGGTGTGGAAGCGAGAgatgat < 1:18167582/68‑1 (MQ=255) gTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatgat < 1:10004097/68‑1 (MQ=255) gTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatgat < 1:13960104/68‑1 (MQ=255) gTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAgatgat < 1:15875856/68‑1 (MQ=255) aTCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGc < 1:17389695/68‑1 (MQ=255) aTCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGc < 1:30121262/68‑1 (MQ=255) cGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCg > 1:3434920/1‑64 (MQ=255) aCTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGtt > 1:16875344/1‑68 (MQ=255) aCTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGtt > 1:11077960/1‑68 (MQ=255) aCTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGCGGAAGCGAGAGATGATTACCGGCTGtt > 1:7426357/1‑68 (MQ=255) gCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTATGGAAGCGAGAGATGA‑TACCGGCTGTTAtat > 1:4366937/1‑66 (MQ=255) cAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCt < 1:20277504/67‑1 (MQ=255) cAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCt < 1:29583200/67‑1 (MQ=255) cAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCt < 1:30327176/67‑1 (MQ=255) cAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCt < 1:12764177/67‑1 (MQ=255) gaagaGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGcc > 1:23759235/1‑68 (MQ=255) agagACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa < 1:17969979/68‑1 (MQ=255) agagACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa < 1:20844930/68‑1 (MQ=255) agagACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa < 1:33182856/68‑1 (MQ=255) gagaCGCTGGAGCAGGAACTACCCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa > 1:17044555/1‑67 (MQ=255) gagaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa > 1:22684506/1‑67 (MQ=255) gagaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa > 1:25095139/1‑67 (MQ=255) gagaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa > 1:27984803/1‑67 (MQ=255) gagaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCAGCaaa > 1:29114495/1‑67 (MQ=255) gagaCGCTGGAGCAGGAACTAACCCTGTTATGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCaa > 1:18670156/1‑67 (MQ=255) gaggCTGGACCAGGAACTAACCCTGTTGTGGATGCGAGAGATGATTACCGGCTGTTATCTGCCAAc < 1:5138717/63‑1 (MQ=255) gaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAAcc < 1:4034465/67‑1 (MQ=255) gaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAAcc < 1:9724032/67‑1 (MQ=255) gaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAAcc < 1:1188763/67‑1 (MQ=255) gaCGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAAc < 1:23324769/66‑1 (MQ=255) cGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTgg > 1:2178575/1‑68 (MQ=255) cGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTgg > 1:3059777/1‑68 (MQ=255) cGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCGGTTATCTGCCAACCTgg < 1:31277254/68‑1 (MQ=255) gctggagctggaACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGgt < 1:24631128/68‑1 (MQ=255) gCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGgt < 1:28908938/68‑1 (MQ=255) gCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGgt > 1:12531246/1‑68 (MQ=255) gCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGgt < 1:15345195/68‑1 (MQ=255) gCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAg < 1:7710524/67‑1 (MQ=255) gCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAg < 1:15162197/67‑1 (MQ=255) gCAGGAACTAACCCTGTTGGGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAg < 1:24411910/67‑1 (MQ=255) aGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGc < 1:18908009/66‑1 (MQ=255) gAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATGTGCCAACCTGGTGACAGcatga > 1:14585593/1‑68 (MQ=255) aaCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttga < 1:6778028/67‑1 (MQ=255) aaCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttga > 1:21155986/1‑67 (MQ=255) aaCTAACCCTGTTATGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttga < 1:30097783/67‑1 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgat < 1:30931248/67‑1 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgat < 1:27176474/67‑1 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgat < 1:32545882/67‑1 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgat < 1:20070340/67‑1 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttga > 1:10287252/1‑66 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttga > 1:8839145/1‑66 (MQ=255) aCTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttga > 1:28437440/1‑66 (MQ=255) aCTAACCCTGTTATGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgat < 1:14146754/67‑1 (MQ=255) cTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatct > 1:15441635/1‑68 (MQ=255) cTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatct < 1:2229785/68‑1 (MQ=255) aCCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttga < 1:15988839/68‑1 (MQ=255) aCCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttga < 1:19008380/68‑1 (MQ=255) aCCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttga > 1:198095/1‑68 (MQ=255) aCCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttga > 1:25353712/1‑68 (MQ=255) aCCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttga > 1:6512891/1‑68 (MQ=255) cccTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttgat > 1:17100805/1‑68 (MQ=255) cccTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttgat > 1:6354028/1‑68 (MQ=255) cccTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttgat > 1:8694394/1‑68 (MQ=255) cccAGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGcttgatcttgat > 1:7336766/1‑68 (MQ=255) ccTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTtgatg > 1:13165077/1‑68 (MQ=255) ccTGTTATGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTtgatg > 1:8359729/1‑68 (MQ=255) cTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTtgatga < 1:26441480/68‑1 (MQ=255) cTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTtgatga < 1:21509566/68‑1 (MQ=255) gttgtGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGatgatg < 1:29827831/68‑1 (MQ=255) gttgtGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGatgatg < 1:16193970/68‑1 (MQ=255) ttgtGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATgg > 1:14752357/1‑68 (MQ=255) tgtgGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGa < 1:20704508/68‑1 (MQ=255) | CGGACGCACCACAGGCGTCGCCTATCGACTGCCAGAAGAGACGCTGGAGCAGGAACTAACCCTGTTGTGGAAGCGAGAGATGATTACCGGCTGTTATCTGCCAACCTGGTGTCAGCTTGATCTTGATGATGGAC > CP009273/1268265‑1268398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |