| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,302,995 | T→G | 14.1% | intergenic (‑93/‑50) | clsA ← / → yciY | cardiolipin synthase 1/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,302,995 | 0 | T | G | 14.1% | 1232.7 / 39.7 | 507 | intergenic (‑93/‑50) | clsA/yciY | cardiolipin synthase 1/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (248/176); new base G (2/80); total (250/257) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.91e-24 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 510 total aligned reads displayed.
ATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGAAC > CP009273/1302928‑1303061 | tATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCggg < 1:22353009/67‑1 (MQ=255) tATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCggg < 1:11768187/67‑1 (MQ=255) gAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtg > 1:8336219/1‑68 (MQ=255) gAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtg > 1:28852985/1‑68 (MQ=255) gtatACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:16242893/4‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:8983216/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:27654027/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:14953900/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:14838649/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:3337828/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:28479647/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:15490654/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:13251144/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:25448074/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:9265310/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:166380/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:231561/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:21010096/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCggggggggg > 1:30910174/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCCTCgggggtggg > 1:29339812/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCAGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:12295466/1‑68 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtgggg < 1:16812301/67‑1 (MQ=255) tACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtgggggt < 1:5986861/68‑1 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat > 1:4019951/1‑68 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat < 1:5015447/68‑1 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:16008155/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:5627069/1‑68 (MQ=255) tGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGa > 1:3355392/1‑67 (MQ=255) tGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGa > 1:30142689/1‑67 (MQ=255) tGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGa > 1:11138752/1‑67 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:10500674/1‑68 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:30220487/1‑66 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:31496255/1‑66 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:717212/1‑66 (MQ=255) cATCTGGCAAATAAAACCGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCt < 1:34434817/68‑1 (MQ=255) cATCTGGAAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCt < 1:9423367/68‑1 (MQ=255) tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGt > 1:31886349/1‑68 (MQ=255) cTGGCAATTAAAATGGCGGGAAAACCACTCGGGAGCGGCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:6298948/68‑1 (MQ=255) cTGGCAAATAAAACCGCGGCAAACGCACTGGGCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:24984510/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt > 1:12729478/1‑68 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt > 1:667238/1‑68 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:7998493/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:19465023/68‑1 (MQ=255) cTGGCAAAAACCAACGCGGGAAACGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:28357509/68‑1 (MQ=255) ggCAAATAAAAACGCGGGAAAAGCACTGGGCAGCGTCGGGGGGGGGCGTATAATGACCATTCTGTTAt < 1:20792303/68‑1 (MQ=255) cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGCCCATTCTGTTAtt > 1:32645488/1‑67 (MQ=255) aattAAAAAGGCTGGAAACGCCGTGGTCAGCGGGGGGGGGGGGTGTATAATGACCATTCTGTTATTGc < 1:17033238/65‑1 (MQ=255) aaaaaaaaACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:4450290/68‑1 (MQ=255) aaaTAAACACGCGGGAAAAGCTCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:22922423/68‑1 (MQ=255) aaaTAAACACGCGGGAAAAGCACTGGTCCGCGTCGGGGGCGGGGGTATAATGACCATTCTGTTATTGc < 1:28166864/68‑1 (MQ=255) aaaTAAAAACGCGGGAAACGCACTGGGCCGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGc < 1:33937799/68‑1 (MQ=255) aaaTAAAAACGCGGGAAACGCACTGGGCAGCGTCGGGGGTGGGGGAATAATGACCATTCTGTTATTGc < 1:1528455/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAACCACTGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:8774452/68‑1 (MQ=255) aTAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCAt < 1:13886319/68‑1 (MQ=255) aaaacCGCGGGAAAAGCACTGGGCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATag < 1:34212860/68‑1 (MQ=255) caaaCGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:14167837/67‑1 (MQ=255) acaaCGCGTGAAAAGCCCTGGTCAGCGGCCGGGGGGGGGGCATAATGACCATTCTGTTATTGCATaga < 1:26878770/66‑1 (MQ=255) acaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:23834945/66‑1 (MQ=255) aacaCGCGGGAAACGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:18454445/65‑1 (MQ=255) aacaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGCGTATAATGACCATTCTGTTATTGCATaga < 1:30393483/65‑1 (MQ=255) aaacCGCGGGAAAAGCACTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:25979638/68‑1 (MQ=255) aaaaGGCGGGAAATCCTGTTGTCAGCGTCGGGGGTTTGGTTATATTGACGATTCTGTTATTGCTTaga < 1:1092432/68‑1 (MQ=255) aaaaCGCGGGAATTGCTCTGGTGAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:19172862/68‑1 (MQ=255) aaaaCGCGGGAAACGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:15640804/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCTTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:24738794/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:21815916/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:13515508/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:23375324/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:8147435/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:27261443/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGGCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:24455514/68‑1 (MQ=255) aaaaCGCGGCAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:10308164/68‑1 (MQ=255) aaCGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGGATAATGACCATTCTGTTATTGCATAGagt < 1:2141987/68‑1 (MQ=255) aaCGCGGCAAAAGCACTGGTCCGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagt < 1:7585558/68‑1 (MQ=255) aCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagta > 1:3503159/1‑68 (MQ=255) cgcgGGAAACGCCCTGCCCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:10089986/68‑1 (MQ=255) cgcgGGAAACGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:32447130/68‑1 (MQ=255) cgcgGGAAACGCACGGGGCCGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:26148206/68‑1 (MQ=255) cgcgGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtag > 1:973010/1‑68 (MQ=255) cgcgGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:17777518/68‑1 (MQ=255) cccggAAACGCCCTGGTCCGCGTCGGGGGGGGGGCGATAATGACCATTCTGTTATTGCATAGagtagt < 1:14523785/65‑1 (MQ=255) aaacGCTCTGGGCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:12883704/67‑1 (MQ=255) aaaaGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:18002714/67‑1 (MQ=255) gcccTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:29626214/65‑1 (MQ=255) cccTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:1819035/3‑67 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:31315526/1‑67 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:1889082/1‑67 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc > 1:11608539/1‑68 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc > 1:31167009/1‑68 (MQ=255) aCTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:24026517/66‑1 (MQ=255) ggTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATCAAGCGGa > 1:13744/1‑68 (MQ=255) gTCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:27893007/67‑1 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:16475433/1‑68 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTATGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:23577334/1‑68 (MQ=255) cAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt < 1:22107212/67‑1 (MQ=255) cAGCGGCGGGGGGGGGGGGATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt < 1:25702605/67‑1 (MQ=255) gCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGa < 1:1748115/68‑1 (MQ=255) gTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGAAc > 1:20138846/1‑68 (MQ=255) gTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGAAc > 1:20486977/1‑68 (MQ=255) gTCGGGGGGGGGGCTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGa < 1:5342575/66‑1 (MQ=255) | ATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGAAC > CP009273/1302928‑1303061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |