| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,460,359 | A→G | 11.8% | pseudogene (711/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,460,359 | 0 | A | G | 11.8% | 1609.8 / 121.7 | 570 | pseudogene (711/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base A (340/148); new base G (7/58); total (354/216) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.43e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 581 total aligned reads displayed.
TGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCA > CP009273/1460293‑1460426 | gAGCTTGTTATTACGGGTGATCATGCCACTGTAAACAACAAAGGCAAAACCACCGTTGACGGCAAGGa < 1:14426498/68‑1 (MQ=18) gAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGa < 1:20801844/68‑1 (MQ=255) gAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGa > 1:14073565/1‑68 (MQ=255) gCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGAt > 1:26850920/1‑67 (MQ=255) gCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGAAAAGAtt > 1:25355505/1‑68 (MQ=255) cTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAATGAtt > 1:34060391/1‑67 (MQ=255) ttGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTcc > 1:11206683/1‑68 (MQ=255) ttGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTcc > 1:13294003/1‑68 (MQ=255) ttGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTcc < 1:16702148/68‑1 (MQ=255) ttattaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCAcc > 1:29567341/1‑68 (MQ=255) tattaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCg > 1:9388212/1‑68 (MQ=255) attaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCgg < 1:4757522/68‑1 (MQ=255) attaCGGGTGATAATGCCACAGTAAACAACAAAGGCAAAACCACCGTTGACGGCAAGGATTCCACCgg < 1:14828674/68‑1 (MQ=17) ttaCTGGTGATAATGCCACTGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGt < 1:17250680/68‑1 (MQ=14) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:5533081/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:13427449/68‑1 (MQ=255) ttaCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt < 1:2148899/68‑1 (MQ=255) taCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGt > 1:17523428/1‑67 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAATGATTCCACCGGTAc > 1:19533973/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:12907782/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:5089109/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:33591205/1‑68 (MQ=255) aCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTAc > 1:30618557/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:31506002/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:8501632/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:21067635/1‑68 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACg > 1:662190/1‑68 (MQ=255) gggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACgg > 1:19879944/1‑68 (MQ=255) ggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGa > 1:31321076/1‑68 (MQ=255) gTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGaa > 1:3538349/1‑68 (MQ=255) gTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGa < 1:28220394/67‑1 (MQ=255) gTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGa < 1:26059994/67‑1 (MQ=255) gTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGa < 1:12606739/67‑1 (MQ=255) gTGATAATGCCACAGTAAACAACAAAGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGa < 1:24451130/67‑1 (MQ=14) gATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGaaa < 1:29009901/67‑1 (MQ=255) gATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGaaa < 1:8962456/67‑1 (MQ=255) aaTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCa > 1:22542138/1‑67 (MQ=255) aaTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGGACGGAAATCa > 1:10462071/1‑67 (MQ=255) aTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAAtt > 1:32871274/1‑64 (MQ=255) aTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAAc > 1:16488989/1‑68 (MQ=255) aTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAAc > 1:1153826/1‑68 (MQ=255) aTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCa > 1:18944475/1‑51 (MQ=14) tGCCACTGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACg < 1:34245147/68‑1 (MQ=11) tGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACg < 1:28803314/68‑1 (MQ=255) gCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACgg > 1:19968981/1‑68 (MQ=255) gCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACgg < 1:32407718/68‑1 (MQ=255) gCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACgg > 1:27193586/1‑68 (MQ=255) ccACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGaa > 1:26975433/1‑59 (MQ=255) cacaGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGt < 1:13113577/67‑1 (MQ=255) cacaGTAAACAACAATGGCAAAACCACCGTTGACGGCAATGATTCCACCGGTACGGAAATCAACGGt < 1:7489614/67‑1 (MQ=255) acaGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCAc > 1:3443606/1‑47 (MQ=11) aGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata > 1:4289134/1‑68 (MQ=255) gTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCGACGGaaata > 1:26297434/1‑67 (MQ=255) gTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata > 1:24654305/1‑67 (MQ=255) gTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata > 1:33391744/1‑67 (MQ=255) tAAACAACAATGGCAAAACCACCGTTGACGGTAATGATTCCACCGGTACGGAAATCAACg < 1:5747220/60‑1 (MQ=255) tAAACAACAATGGCAAAACCACCGTTGACGGCAACGATTCCACCGGTACGGa < 1:10805367/52‑1 (MQ=11) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:29336180/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:10029800/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:22776820/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:21335158/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGtaata < 1:7293826/65‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAAc < 1:30171273/67‑1 (MQ=255) aaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATAGAAGGGAATAACg > 1:7672604/1‑68 (MQ=14) acaacaATGGCAAAACCACCGTTGACGGTAAAGAATCCACCGGTACGGAAATCAACGGTAATAACggg < 1:16057998/68‑1 (MQ=255) caacaaTGGCAAAACCACCGTTGTCGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGa > 1:21895599/1‑68 (MQ=255) caacaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGa > 1:11856914/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:26638731/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:12052543/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:32502380/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:19236568/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:32053722/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:31954478/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:3100782/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa < 1:23791709/68‑1 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGaaa > 1:28449322/1‑68 (MQ=255) acaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGGAATAACGGGaat > 1:22160509/1‑67 (MQ=255) acaaTGGCAAAAACACCGTTGACGGTAAAGATTCCACCGGTACGGAAAGCAACGGTAATAAAGGGaaa > 1:32212297/1‑68 (MQ=17) aaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGTaaa > 1:9813702/1‑66 (MQ=255) aaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGt > 1:27565746/1‑68 (MQ=255) aaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGt < 1:14271914/68‑1 (MQ=255) aaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGt > 1:7940757/1‑68 (MQ=255) tgCAAAACCACCGGTGTAGGTAAATTTTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:31798607/67‑1 (MQ=17) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:18511893/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:12494073/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:15197114/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:15888870/68‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt > 1:525695/1‑68 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGAt < 1:25692095/68‑1 (MQ=255) cAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATATACGGTAATAACGGGAAAGTGATTc > 1:9117216/1‑68 (MQ=255) cGTTGACGGTAAAGATTCCACCGGTACGGAAATCAAGGGAAATAACGGCAAAGTTATTCAGGAGGGCg > 1:16851821/1‑68 (MQ=11) gTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGa > 1:6936391/1‑68 (MQ=255) gTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGa > 1:3817850/1‑68 (MQ=255) tGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGAt < 1:61895/67‑1 (MQ=255) tGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGAt < 1:2480893/67‑1 (MQ=255) tGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGAt < 1:10250787/67‑1 (MQ=255) taCGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATGCAGGACGGCGATCt < 1:17739057/67‑1 (MQ=255) aaaGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGt < 1:330335/68‑1 (MQ=255) aGATTCCACCGGTACGGAAATCAACGGTAATAACg > 1:23390809/1‑35 (MQ=33) aGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCa > 1:20277395/1‑68 (MQ=255) | TGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCA > CP009273/1460293‑1460426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |