| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,062 | T→A | 18.1% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,062 | 0 | T | A | 18.1% | 450.2 / 24.6 | 295 | R629R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (90/125); new base A (39/6); total (142/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.00e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 300 total aligned reads displayed.
GCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGC > CP009273/1702997‑1703126 | cTAATGCGGAACCAGAAGAACAGGTCGCTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:20443383/65‑1 (MQ=25) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:11595647/65‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCAGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:952348/66‑1 (MQ=25) cTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:11813130/66‑1 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCAAAAGc > 1:8635864/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGc > 1:31637231/1‑68 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGCGCCaagg > 1:21626389/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGCAGCGGCTATTGCCCGAGCAAAAGc > 1:13231628/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCCaacg > 1:29005020/1‑65 (MQ=11) aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGc > 1:8736177/1‑68 (MQ=40) aCCTGAAGAAGATGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCa < 1:30540658/68‑1 (MQ=14) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGTGCCAAAGCACGCa > 1:6830029/1‑68 (MQ=255) ccgaataaCTGGCCGCTGCGCGCAAAGCCGCCTACGACGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:7362763/66‑1 (MQ=2) cAGAAGATCCGGTCGCTCCGCGCAAAGCCGCCGTCGTAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:12940152/68‑1 (MQ=14) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAGCCCGCAAGCTg > 1:18633296/1‑68 (MQ=11) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCACGCAAGCTg > 1:57535/1‑68 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTg > 1:23885778/1‑68 (MQ=255) aagaaCAGGTAGATCCGCGCAAAGAAGAAGTCGAAGCCGCTATAGCCCGAGCAAAAGCACGCAAgaag > 1:17040554/1‑65 (MQ=2) caaCATGTGGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:23078285/67‑1 (MQ=11) caaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:28479576/67‑1 (MQ=18) caaCAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:22707054/67‑1 (MQ=16) caaCAGGCCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:5496116/67‑1 (MQ=11) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGa > 1:1610361/1‑67 (MQ=25) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTggccc > 1:17441643/1‑65 (MQ=25) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAAc > 1:34341174/1‑68 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCGGGAAc > 1:30350593/1‑68 (MQ=25) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCAGGCAc > 1:20874145/1‑68 (MQ=255) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAAc > 1:13835002/1‑68 (MQ=25) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGAAAGCTGGAAc > 1:26966188/1‑68 (MQ=255) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGAAAGCTGGAAc > 1:3472090/1‑68 (MQ=255) aCAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGCACGCAAGCTGGaa > 1:8871173/1‑67 (MQ=11) aGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCACGTGCCAAAGCACGCAACGAGGAACa > 1:11502345/1‑67 (MQ=11) gctgATCCACGTAAACCTGCCGTAGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:23689451/65‑1 (MQ=1) tCGATCCGCGCGAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:23288493/1‑67 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:10638354/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:7579912/1‑67 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:28935157/1‑67 (MQ=25) gcGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGc < 1:9835203/65‑1 (MQ=11) tCCTCGCAAAGCCGCTGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:13641269/68‑1 (MQ=11) tCCTCGCAAACCCGCCGTTGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:12683244/68‑1 (MQ=11) tCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:33169742/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:6466861/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:1436061/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:3228504/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:4336151/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:29629940/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:34079412/68‑1 (MQ=255) tCCGCGCAAAGCAGCCTTATAAGCCTCTATTTCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:25857999/68‑1 (MQ=11) tCCGCGCAAAGCAGCCGTCGAAGCCGCTAATGCCCGTGCCAAAGCACGCAAGCTGGAAAAGCAACAgg < 1:27032041/68‑1 (MQ=11) tCCCCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:7878612/68‑1 (MQ=255) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:1968802/68‑1 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCTTGCAAAAGAACGCAAGCGGGACCCGCAACAGGc > 1:14725597/1‑68 (MQ=11) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:32643225/1‑66 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:3139790/1‑66 (MQ=35) cgcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:25055648/59‑1 (MQ=35) cgaaaaaCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa < 1:12813442/65‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:6031832/1‑68 (MQ=25) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:19397015/1‑68 (MQ=25) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:7070834/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCAAATGCCGa > 1:25627638/1‑68 (MQ=255) ctgccgTCGAAGCAGCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:10204861/66‑1 (MQ=11) ccgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:31109857/68‑1 (MQ=255) cagccgTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:24853343/66‑1 (MQ=255) ctccgTCGAAGCCGATATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:18238417/65‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 1:24117213/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 1:21363984/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 1:27911083/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg > 1:16004113/1‑68 (MQ=255) gtagAAGCAGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGa < 1:27667693/65‑1 (MQ=14) cGAAGCCGCTATTGCCCGTGCCAAAGCTGGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:15105611/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:17138144/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:24349921/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGaac > 1:17964268/1‑68 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:21259157/68‑1 (MQ=255) agAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:6558353/67‑1 (MQ=255) gAAGCAGCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:3597695/68‑1 (MQ=11) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAg > 1:28130649/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:26042231/1‑68 (MQ=255) cGCTATTGCCCGTGCGAAAGCTCTCAAGCTGTAACATCAAATGGCTAATGCCGATCCAGAACAACAg < 1:33437829/67‑1 (MQ=14) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:18338407/67‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGAACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAgg < 1:3899736/68‑1 (MQ=255) agCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:21088494/66‑1 (MQ=255) agCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:27314358/66‑1 (MQ=255) aTTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGa > 1:22584298/1‑68 (MQ=255) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGCGCCCGAACAACAGGTCGAt > 1:29796324/1‑67 (MQ=255) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt > 1:32868067/1‑67 (MQ=255) gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:13567359/1‑68 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACCGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGATcc > 1:14567679/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGGCAGAAGCACAGGTCGATcc > 1:4053852/1‑67 (MQ=14) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATcc > 1:634845/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGATcc > 1:5149179/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGATcc > 1:31257156/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATcc > 1:10518710/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:15392096/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:4556477/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:9700078/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:29898418/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATcc > 1:33952343/1‑67 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:82416/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCcgc > 1:1249165/1‑68 (MQ=255) | GCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGC > CP009273/1702997‑1703126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |