| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,295 | T→A | 16.0% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,295 | 0 | T | A | 16.0% | 819.8 / 93.4 | 340 | V707E (GTA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (119/164); new base A (43/13); total (162/178) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.83e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 362 total aligned reads displayed.
GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 | gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:11952977/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:27454970/1‑68 (MQ=255) cTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:20866323/68‑1 (MQ=255) cTGCCGTAGAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:21921025/68‑1 (MQ=14) tGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:14592915/68‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:11098761/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:21199213/67‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:8915398/68‑1 (MQ=255) tGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:9476175/66‑1 (MQ=255) tGCCGTAGAAGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:13809801/66‑1 (MQ=255) cgCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:29867014/65‑1 (MQ=255) cgCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:25013374/66‑1 (MQ=255) gCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGGTAATGCGGTAcc > 1:10827316/1‑68 (MQ=255) cGTGGAAGCAGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:29036459/67‑1 (MQ=14) cGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:8058247/67‑1 (MQ=255) gTCGAAGCTGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:2596061/68‑1 (MQ=255) cGAAGCGGCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:1340377/68‑1 (MQ=255) gAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:27640627/68‑1 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:28556240/1‑68 (MQ=255) ggCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:7717184/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAgg < 1:14799844/68‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:28412228/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:7019917/67‑1 (MQ=255) cgCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:3148088/66‑1 (MQ=11) cgCTATTGCACGAGCCAAAGCCCGCAAGCTGTAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:6324336/66‑1 (MQ=14) cgCTATCGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:10348462/66‑1 (MQ=255) agCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:15521852/66‑1 (MQ=11) agCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:5663546/66‑1 (MQ=255) gCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCTGTACCAGAAGAACAGGt < 1:32861261/68‑1 (MQ=11) gCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACATCAACAGGCTAATGCGGTACCAGAAGAACAGGt < 1:6618444/68‑1 (MQ=255) aTTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa < 1:13169431/68‑1 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:15116195/1‑67 (MQ=255) gCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:1988955/1‑68 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:484084/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:24837291/1‑67 (MQ=255) gcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCa < 1:19231462/67‑1 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa > 1:30179776/1‑68 (MQ=255) cAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa < 1:5162634/67‑1 (MQ=255) aaaGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc < 1:29641179/68‑1 (MQ=255) aGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCg > 1:12739218/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:2542958/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:12815183/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:9413842/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:20387935/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:19546345/1‑68 (MQ=255) aCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCa < 1:25678982/67‑1 (MQ=255) cTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCcgc > 1:7892674/1‑68 (MQ=14) tGGACCAGCAACAGGCTAATGAGGTACAAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:23880398/68‑1 (MQ=18) tGGAACAGCAACAGGCTATTGCGGTAACAGATCAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:7633330/68‑1 (MQ=18) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:16459717/68‑1 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:33373124/68‑1 (MQ=255) ctaaCAGAAAC‑GGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:8302974/66‑1 (MQ=18) gAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCcgcg > 1:26849910/1‑66 (MQ=11) caaCAGCAACCGGCTAATGCGGAACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:310558/67‑1 (MQ=17) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:31697156/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:11651074/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:12174132/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:21065246/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:3968194/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:24737443/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTCGCCGCGGc < 1:3677523/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:30857209/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:33183101/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:18685898/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTGGCCGCCGCTa > 1:26197069/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGt > 1:32089916/1‑57 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTa > 1:4497301/1‑68 (MQ=17) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTAGACGCGGCTa > 1:1125831/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:27972255/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCCGCTa > 1:13644480/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTa > 1:10605947/1‑68 (MQ=14) aGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTAGCCGCGGCTAtt > 1:5983627/1‑68 (MQ=11) cAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTg > 1:22180754/1‑67 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTg < 1:22767354/66‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:17779694/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:10064314/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:26333577/1‑67 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:17893247/1‑67 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACACGATGATCAGCGCAAAGCGGCAGTTGCCGAGGCTATAGc > 1:1377014/1‑67 (MQ=21) aaCAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:30368672/68‑1 (MQ=255) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTATTGCCcgc > 1:33769876/1‑66 (MQ=14) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc < 1:11556973/65‑1 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc < 1:33720164/67‑1 (MQ=255) cTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTCGACGCGGCTATTGCCCgagca > 1:16012465/1‑67 (MQ=11) aaTGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCa < 1:32371860/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:4348704/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:3420398/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:30675777/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:18147516/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:26685635/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:15708734/68‑1 (MQ=255) tGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:7174644/68‑1 (MQ=255) tGCGGAACCAGAAGAACACGGTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:21579177/68‑1 (MQ=21) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:23006725/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:14260960/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:29349966/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:9711280/1‑67 (MQ=255) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTGGCCGCGGCTATTGCCCGAGCGCAgg > 1:17112516/1‑67 (MQ=17) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCAGCCGCTATTGCCCGCGCCCAgg > 1:24422422/1‑67 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGCCGCCGCTATTGCCCGCGcacaag > 1:31360766/1‑65 (MQ=11) | GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |