| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,303 | G→C | 6.9% | E710Q (GAA→CAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,303 | 0 | G | C | 6.9% | 913.9 / 17.1 | 299 | E710Q (GAA→CAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (147/128); new base C (20/4); total (167/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.80e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 330 total aligned reads displayed.
CGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCG > CP009273/1703236‑1703369 | gAAGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:30850911/68‑1 (MQ=255) aGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc > 1:20344090/1‑68 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:3947995/66‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:28412228/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:10814126/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:15953765/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:7019917/67‑1 (MQ=255) cgCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:13398690/66‑1 (MQ=255) cgCTATCGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:10348462/66‑1 (MQ=255) agCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:5663546/66‑1 (MQ=255) cACGCGCCAACGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:16743625/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:3492587/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:28642350/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:9458355/1‑67 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa > 1:30179776/1‑68 (MQ=255) cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa < 1:13072556/67‑1 (MQ=25) cAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa < 1:5162634/67‑1 (MQ=255) aaaGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc < 1:29641179/68‑1 (MQ=255) aGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCg > 1:12739218/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:12815183/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:15111685/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:11808843/1‑68 (MQ=255) aCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAg > 1:19579317/1‑68 (MQ=255) cAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGta > 1:6659959/1‑66 (MQ=11) aGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGcc > 1:27906452/1‑68 (MQ=255) gCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGcc > 1:27113583/1‑67 (MQ=255) tGGACCAGCAACAGGCTAATGAGGTACAAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:23880398/68‑1 (MQ=18) tGGAACAGCAACAGGCTATTGCGGTAACAGATCAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:7633330/68‑1 (MQ=18) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:10550408/68‑1 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:25469785/68‑1 (MQ=255) gggAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:21983497/67‑1 (MQ=255) ctaaCAGAAAC‑GGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:8302974/66‑1 (MQ=18) gAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg > 1:27563832/1‑66 (MQ=255) caaCAGCAACCGGCTAATGCGGAACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:310558/67‑1 (MQ=17) aaCCGCAACCGGCTAAAGCGCAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:336175/67‑1 (MQ=14) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:1916571/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:11184527/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:22351950/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:12174132/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:31734829/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:18149909/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:4268690/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGt > 1:32089916/1‑57 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:8402679/1‑68 (MQ=17) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCAGCGGCTa > 1:33919442/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGACGCGGCTa > 1:20497635/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTAGACGCGGCTa > 1:1125831/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:26115487/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTTGCCGCGGCTa > 1:33352974/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAAAACAACAGGTAGATCCGCGGAAAGCGGCAGTAGCCGCCGCTa > 1:14568449/1‑68 (MQ=11) aGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:13674821/1‑68 (MQ=255) aGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCCGTAGCCGCGGCTAtt > 1:5983627/1‑68 (MQ=11) aGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:7685258/1‑68 (MQ=17) aGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTAtt > 1:22851576/1‑68 (MQ=14) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:17779694/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:6468419/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:24763417/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:26349739/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:10064314/68‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc < 1:32874533/67‑1 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACACGATGATCAGCGCAAAGCGGCAGTTGCCGAGGCTATAGc > 1:1377014/1‑67 (MQ=21) aaCAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGc > 1:4466427/1‑67 (MQ=17) gCTAATGCGGTACCAGAAGAACAGGTTGTTCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:16074075/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:30535580/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:14029382/1‑66 (MQ=255) gCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTGGCCGCGGCTATTGCCcgcg > 1:789541/1‑67 (MQ=11) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:9331566/1‑67 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc < 1:15400727/67‑1 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc < 1:31449003/67‑1 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:11592953/1‑67 (MQ=255) cTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgcg < 1:21650876/66‑1 (MQ=255) atAATGCGGTACAAGCAGAACAGGTTGATCCGCGCAAAGCTGCAGTTGCCGCGGCTATTGCCCgcgc < 1:33758710/66‑1 (MQ=18) tAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCt < 1:14236570/67‑1 (MQ=255) aaTGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCa < 1:32371860/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:21132202/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:30022111/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:17963699/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:28163534/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:17071110/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:26685635/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:26220060/68‑1 (MQ=255) tGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:7174644/68‑1 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:25867050/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:2486841/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:24495761/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:23006725/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:29148974/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:29349966/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGAGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:25386686/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGATGATCCGCGCAAAGCGGCAGTTGCCGAGGCAATAGCCCTCGCTCacg > 1:9619465/1‑65 (MQ=25) aCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaa > 1:15691439/1‑68 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaaaa > 1:18761157/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgcc > 1:19896971/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgcc > 1:1927084/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgcc > 1:4776135/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgcc > 1:452416/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAATGCCCGCGCACAGGCCAAAAAAgcc > 1:26827447/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCACGGCTATTGCCCGCGCTCAGGCCAAAAAAgcc > 1:10995650/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAgcc < 1:3094178/67‑1 (MQ=255) agaaCAGGTCGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGCCCGCGCGAAGGCCAAAAAAgcc > 1:14748851/1‑67 (MQ=25) | CGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCG > CP009273/1703236‑1703369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |