| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,315 | T→A | 6.3% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,315 | 0 | T | A | 6.3% | 741.6 / 9.2 | 312 | intergenic (+354/+260) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base T (129/158); new base A (23/2); total (152/160) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 332 total aligned reads displayed.
CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGG > CP009273/3263248‑3263382 | ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt < 1:27578693/68‑1 (MQ=31)ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt < 1:21321115/68‑1 (MQ=31)ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGt < 1:15673345/68‑1 (MQ=31) cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTa < 1:18474077/68‑1 (MQ=33) cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTa < 1:3985434/68‑1 (MQ=33) cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTa < 1:30073042/68‑1 (MQ=33) cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTa < 1:26321557/68‑1 (MQ=33) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCAGCCCCTCCAAAAGTAAAAAc > 1:23234330/1‑67 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGttt > 1:11856401/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTAAAAAAACGCCCAAGCGGGttt > 1:11658145/1‑68 (MQ=11) ataGTGTCGTGGACAGTCCTTCATCTTTCGGCCCCTACAAAAGTAAAAACCCGCCGCCGCGGGttttt > 1:17947753/1‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAACTAAAAACCCGCCGCAGCGGGttttt > 1:28773037/1‑68 (MQ=11) tgtgtCGTTGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:26657508/67‑1 (MQ=255) aGTGTCTTTGACATTCATTCATCTTTCTGCCCCTCCAAATGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:14442090/68‑1 (MQ=11) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:14738689/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:9934349/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:31020592/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTAc < 1:24952014/68‑1 (MQ=35) gtgtCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg > 1:13021247/1‑68 (MQ=255) tgtCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGt > 1:13511543/1‑68 (MQ=255) gtCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAAACCGCCGAAGCGGGGTTTTACGTa > 1:20625597/1‑68 (MQ=11) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACggt > 1:25828960/1‑66 (MQ=25) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:13185068/1‑68 (MQ=35) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:4859904/1‑68 (MQ=35) gtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:24134068/1‑68 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:6845216/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:7917855/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:1994301/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa > 1:22306997/1‑68 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:18385774/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:17394729/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:33246746/68‑1 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:9191594/1‑68 (MQ=40) ggACAGTCATTCATCTTTCTGCCCCTCAAAAAGTAAAAACCCGCCCAGGCGGGTTTTTACGTAAAACa > 1:33536061/1‑68 (MQ=14) ggACAGTCATTCATCTTTCTGCCCCTACAAAAGTAAAAACCCGCCGCAGCGGGGTTTTACGTAAAACa > 1:22834541/1‑68 (MQ=14) ggACAGTCATTCATCTTTCTGCCCCTACAAAAGAAAAAACCCGCCGAAGAGGCTTGTTAAGTAAAACa > 1:25232195/1‑68 (MQ=11) ggACAGTCATTCATCTTTATGCAACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:19470000/1‑68 (MQ=14) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAgg > 1:10643946/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAgg > 1:10790749/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCAGAGGGTTGTTACGTAAAACAgg > 1:30694709/1‑68 (MQ=14) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACTgg > 1:5908430/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:16473659/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:29578258/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:19517855/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:27240399/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:28189205/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:28141013/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:20999650/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:12423126/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:8180358/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAAACCGAAGAAGCGCGTTTATACGTAAAACAgg > 1:20219645/1‑68 (MQ=11) aCAGTCATTCATCTTTCGGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:11298320/1‑68 (MQ=255) gTCATTCATCTTTCTGCCCCTACAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa > 1:2529815/1‑68 (MQ=255) cattcatCTTTCTGCCCCTCCAAAATTAAAAAGCCGCCGAAGCGTGTTTTTACGTAAAACAGGTGaa < 1:24319350/67‑1 (MQ=14) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGt < 1:34484792/64‑1 (MQ=40) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa > 1:10194225/1‑67 (MQ=40) catgcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa > 1:16154137/1‑67 (MQ=255) cttCTTTCTGGCCCTCAAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa < 1:12212706/66‑1 (MQ=14) catCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa < 1:5163161/68‑1 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:4302349/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:12591021/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:7213226/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:19352389/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:1979505/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:17824772/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:2166683/1‑67 (MQ=255) tatttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:27002787/66‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:27904740/68‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:32991268/68‑1 (MQ=255) cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCg > 1:9681130/1‑68 (MQ=255) cTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCg > 1:2186437/1‑68 (MQ=255) tttCTGCCCCTCCAAAAGTAAAAACCCGCCGCATCGGGTTTTTTCGTAAAACAGGTGAAACTGACCGa < 1:9590687/68‑1 (MQ=14) tttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGa < 1:15067191/68‑1 (MQ=40) tCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa > 1:5528286/1‑68 (MQ=255) tCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa > 1:7589812/1‑68 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:8408529/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:1669458/1‑67 (MQ=255) cccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCg > 1:17212391/1‑68 (MQ=40) ccTCCAAAAGTTAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:24431642/68‑1 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:32085305/68‑1 (MQ=255) acTCCAAAAGTTAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:32126225/67‑1 (MQ=255) tcaaaaaGTACAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt < 1:33453022/65‑1 (MQ=255) aaaaTTATAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:8781037/68‑1 (MQ=14) aaaaTTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttct < 1:31706739/68‑1 (MQ=14) aaaaTTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:22557282/68‑1 (MQ=255) aaaaGTAAAACCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:34004205/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGTAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:10372030/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAATCGGGTTTTTACGTAAATGAGGTGAAACTGACCTATAAGCCGctttct < 1:26460525/68‑1 (MQ=11) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:29307709/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:2345883/68‑1 (MQ=255) aaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt < 1:17554117/68‑1 (MQ=40) aaGTATAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttcttt < 1:16824886/68‑1 (MQ=14) aaGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttcttt < 1:20721719/68‑1 (MQ=14) aaGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:13853838/68‑1 (MQ=255) aaGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:22726644/68‑1 (MQ=255) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttcttt < 1:24739647/68‑1 (MQ=255) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:6538437/68‑1 (MQ=40) aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGggttctttg > 1:32506924/1‑67 (MQ=11) aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGcgttctgtg > 1:4521103/1‑65 (MQ=255) gTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:28448501/1‑68 (MQ=39) | CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGG > CP009273/3263248‑3263382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |