| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,441 | A→C | 9.1% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,441 | 0 | A | C | 9.1% | 829.9 / 8.8 | 358 | intergenic (+480/+134) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (158/135); new base C (18/19); total (176/182) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 364 total aligned reads displayed.
TCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTG > CP009273/3263375‑3263508 | tctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa < 1:7773960/68‑1 (MQ=35) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg > 1:19708239/1‑68 (MQ=35) ttGGGTATAGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg < 1:20166634/68‑1 (MQ=25) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:10643302/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg > 1:3124337/1‑66 (MQ=35) tggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:4632457/67‑1 (MQ=25) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:22031912/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCACCAAAACCAAAAACCCGCCGAAGCGCGt > 1:21046239/1‑68 (MQ=11) gTATAGTGTCGTGGCCAGTCATTCCTCTTTGGGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGttt > 1:27601487/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCAACAAAAGCAAAAACCCGCCGCAGCGGGgtt > 1:16860079/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTGAGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:11221987/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATATTTGTGCCCCTACAAAAGCAAAAACCCGCCGCAGCGGGttt > 1:26273224/1‑68 (MQ=11) ttaGTGTCGTGGACAGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAAACCGCCGAAGCGGGttttt > 1:8185400/2‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:23155171/1‑68 (MQ=35) ataGTGTCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGCAAAAACCCCCCCAAGCGGGttttt > 1:6330654/1‑68 (MQ=11) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:21923368/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAGAAACCCGCCGAAGCGGGTTTTTAc < 1:21430559/68‑1 (MQ=25) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:19244332/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:19433933/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:18674903/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:6188018/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:27358677/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:12340075/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:24221799/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAACCAAAAACCCGCCGCAGCGGGTTTTTAc > 1:33069275/1‑68 (MQ=255) aGTGTCGTGGACAGTCAATCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:26833375/68‑1 (MQ=25) gtgtCGTGGCCAGTCATTCATCTTTCTGCGCCTCCAAAAGCAAAAACCCGCCGCAGCGGGTTTTTTCg > 1:28090754/1‑68 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTaag > 1:2413348/1‑66 (MQ=18) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:17714381/1‑68 (MQ=18) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCAACAAAAGCAAAAACCCGCCGAAGCGGGGTTTTaag > 1:7305490/1‑66 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCAGCCCCTCCAAAAGCAAAAACCCGCCGCAGCCGGTTTTTaag > 1:4085437/1‑66 (MQ=11) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAATCGGGGTTTTACGt > 1:28622367/1‑68 (MQ=255) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCCGCGTTTTACGt > 1:32921823/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:10535932/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:10895523/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:12677532/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCCGGTTTTTACGTAAACCa > 1:9139860/1‑68 (MQ=25) aaaGTCATTCATCTTTCTGACCCTCCAAAAGCAAAAACCCTCCGAAGCGGGTTTTTACGTAAACCAg < 1:5999599/65‑1 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGCGTTTTACGTAAGCCAgg > 1:89404/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:6535454/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:5431943/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:4249161/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:25951437/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:33812846/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:969626/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:17140251/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:22764496/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTACAAAACCAAAAACCCGCCGAAGCGGGTTTTTAAGTAATCCAgg > 1:23807705/1‑68 (MQ=11) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGACGCGGGGTTTTCCGTAAACCAGGTGa > 1:14207757/1‑68 (MQ=11) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt < 1:11631506/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:30785516/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:21742994/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGa < 1:8450912/66‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:29967979/1‑68 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:26074884/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:22473680/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:19023300/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:34323922/1‑67 (MQ=35) tatttATGCCCCTCAAAAAGCATAAACCCGCCGTATCGGGTTTTTACGTAAACCAGGTGAAACTGAcc < 1:28759848/66‑1 (MQ=11) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc > 1:2519897/1‑68 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:1504993/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:15929761/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:11782092/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:23620998/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:15309851/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGc < 1:25710078/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACAAGGTGAAACTGACCGATAAg > 1:12957471/1‑67 (MQ=25) ccccTCCAAAGGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc > 1:30287780/1‑68 (MQ=25) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCg > 1:29319449/1‑68 (MQ=35) cacTCCACAAGCATAAACCCGCCGTAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc < 1:3278209/65‑1 (MQ=11) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctt < 1:27170114/68‑1 (MQ=40) aaaaTCACAAACCCGCCGCACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttct < 1:33654156/68‑1 (MQ=14) aaaaTCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:17451466/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGTAGCGGGTTTTTACGTAAAGCAGGTTAAACTGACCGATAAGCCGctttct < 1:20565482/68‑1 (MQ=11) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:25388576/68‑1 (MQ=255) aaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttctt > 1:16548181/1‑68 (MQ=255) aaGCAAAAACCCGCCGTATCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttcttt < 1:22322318/68‑1 (MQ=14) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:25101636/1‑68 (MQ=40) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:13467740/1‑68 (MQ=40) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:8241622/1‑68 (MQ=40) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:5732616/1‑68 (MQ=40) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTTg > 1:29771835/1‑68 (MQ=255) cAAAAACCCGCCGGAGCGGGTTTTTACGTAAATCAGTTTAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:3601669/68‑1 (MQ=11) acaaaCCCGCCGTATCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:29244562/65‑1 (MQ=11) aaaaaCCCGCCGCACCGGGTTTTTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:3108564/67‑1 (MQ=11) gaaaCCCGCCGTACCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:14853639/67‑1 (MQ=11) caaaCCCGCCGTACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:444152/67‑1 (MQ=11) caaaCCCGCCGCACCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:16206525/67‑1 (MQ=11) aaaaCCCGCCGCACCGGGTTATTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:7577856/68‑1 (MQ=11) aaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:24478567/68‑1 (MQ=35) aaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:14444134/68‑1 (MQ=35) ccgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc < 1:33973521/68‑1 (MQ=37) gccgTATCGGGTTTTTACGTAAACCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:10162533/68‑1 (MQ=14) gccgTACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:26664685/68‑1 (MQ=14) gccgCACCGGTTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:18443375/68‑1 (MQ=14) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:33491607/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:11909281/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:3177701/68‑1 (MQ=40) gccgAACCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:27037147/68‑1 (MQ=14) gccgAACCGGGTTATTACGTACACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:13647162/68‑1 (MQ=14) | TCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTG > CP009273/3263375‑3263508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |