| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,554 | A→C | 7.2% | intergenic (+593/+21) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,554 | 0 | A | C | 7.2% | 971.7 / 6.0 | 372 | intergenic (+593/+21) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (183/140); new base C (11/19); total (195/177) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.35e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 382 total aligned reads displayed.
TTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCA > CP009273/3263487‑3263621 | tctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa > 1:30549797/1‑68 (MQ=35) tctttTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAAACCCCCGac > 1:15703195/1‑67 (MQ=11) tGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:26922389/68‑1 (MQ=35) gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:3025410/68‑1 (MQ=35) ggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGtt > 1:6899019/1‑68 (MQ=255) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:15037612/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:21613587/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:13343669/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:6357852/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCCCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:11921430/1‑68 (MQ=255) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGCAGCCGGttt > 1:26051340/1‑68 (MQ=11) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:2055892/1‑68 (MQ=255) taGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtttttg < 1:11558075/68‑2 (MQ=25) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:10191048/68‑1 (MQ=35) aGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:31444068/68‑1 (MQ=35) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:29159067/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:10282573/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:3770683/1‑68 (MQ=33) gCGTCGTCGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:24414409/67‑1 (MQ=18) cgtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt > 1:31820652/1‑68 (MQ=31) cgtcgtGGACAGTCATTCATATTTATGCCCCTCCAAAACCAAAAAACCGCCGAAGCGGGTTTTTACGt > 1:31666454/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTCCCCCTACAAAAGAAAAAACCCGCCGACGCGGGGTTTTAAGTAAATCa > 1:17125465/1‑68 (MQ=11) cacgTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:13810028/64‑1 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:4378031/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:1216762/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:16687012/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:16855451/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:8062348/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:26485802/1‑68 (MQ=25) aCAGTCATTCATCTATCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGCGTTTTTACGTAAATCAgg > 1:8447243/1‑68 (MQ=11) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:12824413/1‑68 (MQ=35) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:12628443/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaaa < 1:9644658/68‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:5363859/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:10720867/66‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg > 1:11437329/1‑68 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:31988949/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:609646/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:7530557/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAACAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:11678036/1‑67 (MQ=25) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:8783103/1‑68 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:34346416/1‑68 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:24296502/1‑68 (MQ=35) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCg > 1:3343183/1‑68 (MQ=35) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCg > 1:24604950/1‑68 (MQ=35) cTGGCCCTCCACAAGCTAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa < 1:21105432/68‑1 (MQ=11) tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa > 1:20964329/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:9413819/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:33798335/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:18306880/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:775983/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:2966090/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCCAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:27453117/1‑67 (MQ=255) gCCACTCAAAAATCAAAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGc < 1:11131392/68‑1 (MQ=11) gcacTCCACAATCACAAACCCGCCGAACCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGc < 1:25494913/64‑1 (MQ=11) ccccTCCAAAAGCAAAAACCCGCCGAGGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGcc > 1:15205467/1‑68 (MQ=255) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:16027151/1‑68 (MQ=35) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:16990077/68‑1 (MQ=37) acTCAAAAATCATAAACCCGCCGGACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:33230049/67‑1 (MQ=11) tCCAAAAGCACAAACCCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:10897748/68‑1 (MQ=255) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:17804210/68‑1 (MQ=40) aaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt > 1:19767782/1‑64 (MQ=40) acgCATAAACCCGCAGAAGCTGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:23747648/66‑1 (MQ=17) acgCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:29392545/66‑1 (MQ=255) aaGCATAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:30846721/68‑1 (MQ=17) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:27926882/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:28664248/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:31192715/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:14222064/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:24027547/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:32310030/68‑1 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc > 1:28363941/1‑68 (MQ=255) gaaaaaaCCCGCCGAACCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg < 1:29846515/66‑1 (MQ=255) cttaaaCCCGCCGTACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGt < 1:19478486/65‑1 (MQ=17) aaaCCCGCCGGATCGGTTTTTTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGa < 1:9126767/68‑1 (MQ=17) aaCCCGCCGAATCGGGTTTTTACGTACATCAGGTGAAACTGACCGATAAGCCNGGTTCTGTCGTGGAc < 1:33302349/68‑1 (MQ=18) aCCCGCCGTACCGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:14800146/68‑1 (MQ=18) aCCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:30072133/68‑1 (MQ=255) aCCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 1:2512814/1‑68 (MQ=255) aCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTTTTGTGGaga > 1:5836173/1‑66 (MQ=11) cccGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg > 1:14446091/1‑68 (MQ=255) cccGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg > 1:19861638/1‑68 (MQ=255) ccgccgTACCGGTTTTTTACGTAAATCAGGTTAAACTGACAGATAAGCCGGGTTCTGTCGTGGACAGt < 1:22277672/68‑1 (MQ=21) ccgccgAAGCGGGTTTTTTCGTAAATCAGCTGAAACTGACCTATTAGCCGGGTTCTGTCGTGGACAGt < 1:28839908/68‑1 (MQ=21) ccgccgAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:13490463/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:3535692/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:21993708/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:5090832/68‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:15898842/68‑1 (MQ=255) ccgccgAAGAGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt < 1:15381689/68‑1 (MQ=255) cgccgcACCGGTTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:29147145/68‑1 (MQ=17) cgccgTATCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:32868050/68‑1 (MQ=18) cgccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtc < 1:13121991/68‑1 (MQ=255) gccgCACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:20222150/68‑1 (MQ=21) gccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:22620743/68‑1 (MQ=255) gccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:2728350/68‑1 (MQ=255) gccgAACCGGGTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtca < 1:25738992/68‑1 (MQ=21) ccgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcat > 1:19108704/1‑68 (MQ=255) cgAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcag > 1:4542009/1‑66 (MQ=255) aaGCGGGTTTTTTCGTAACAGCGGTGAATCTGACCTATAACCCGGTTTCTGTCGTGGACAGtcattca < 1:23415419/68‑1 (MQ=16) | TTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCA > CP009273/3263487‑3263621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |