| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,063,843 | A→C | 11.9% | intergenic (‑82/+32) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,063,843 | 0 | A | C | 11.9% | 1056.7 / 18.8 | 367 | intergenic (‑82/+32) | yihR/yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| Reads supporting (aligned to +/- strand): ref base A (280/26); new base C (2/40); total (282/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.19e-32 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 432 total aligned reads displayed.
GGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAA > CP009273/4063776‑4063909 | ggCTGATGTCAAACCCAAAAACTGCCCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGgaga > 1:27824986/1‑68 (MQ=255)ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGgaga > 1:4905452/1‑68 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag > 1:10518629/1‑68 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag > 1:28248707/1‑68 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGagag > 1:26240953/1‑68 (MQ=255) tGATGTAAAACCAAAAAACTCCACGGGACGGGCCCCTCGCCCCTTTGGGGTGTGGGTTTGGGAGAgg < 1:21834178/67‑1 (MQ=18) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaa > 1:30562275/1‑68 (MQ=255) gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa > 1:9337880/1‑68 (MQ=255) gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa > 1:18138586/1‑68 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGaaa > 1:25181372/1‑67 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAAccc > 1:29533036/1‑67 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCg > 1:17704360/1‑67 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGc > 1:25636592/1‑68 (MQ=255) aaaaaCTGCCCGGGCCGGTCCCCTCGCCCGTTTGGGGAGTGGGTTAGGGAGAGGGGAAAACCCGCAcc < 1:7419985/68‑1 (MQ=18) aaaaaCTGCCCCGGCCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTTGGGAGAGGGGAAAACCCGCAcc < 1:22475610/68‑1 (MQ=21) aaaaCTGCCCCGCCCGGTCCCCTCGCCCCTTTGGGGAGTGGGTTTGGGAGCGGGGAAAACCCGCAccc < 1:30950618/68‑1 (MQ=18) aaaaCTCCCCGGCACGGTCCCCACGCCCGTTTGGGGAGTGGTTTAGGGAGTGGGGAAAACCCGCAccc < 1:31455649/68‑1 (MQ=19) aaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGA‑GGTTAGGGAGAGGGGAAAACCCGCACCCTAt < 1:12042263/68‑1 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:19363016/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:15302569/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:33301034/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:25005971/1‑68 (MQ=255) aCCGGACGGTCCCCTCGCCCCGTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCa > 1:23424526/1‑68 (MQ=255) ccGGACGGTCCCCTCGCCCCTGTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCGTATTTTCAg > 1:20486213/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCa > 1:29609825/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCa > 1:24600034/1‑68 (MQ=255) cGGTCTCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCa < 1:12893573/67‑1 (MQ=255) cGGTCCCCTCGCCCCTTTGGGGGGTGGGTTCGGGAGCGGGGAAAACCCGCACCCTATTTTCAGATCa < 1:1904491/67‑1 (MQ=25) ggcccccGCGCCCTTTGGGGGAGTGGGTTGGGGGGCGGGCAAAACCCGCACCCTATTTTCAGATCAGt < 1:21561845/65‑1 (MQ=255) ccccccGCCCCCTTTGGGGGCGGGGGTTGGGCCGGGGCCAAAACCCGCACCCTATTTTCAGATCAGtt < 1:1241740/66‑1 (MQ=255) ccccTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:837485/1‑68 (MQ=255) cTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCCCCCTATTTTCAGATCAGTTATTTc > 1:15664164/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:30132828/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:19150372/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:18012447/1‑68 (MQ=255) cGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:11237101/1‑68 (MQ=255) cccccTTTGGGTTTTGGGTTTGGGACGGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:3368589/67‑1 (MQ=255) cccccTTTGGGGTTTTGGTTAGGGAGTGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:31852093/67‑1 (MQ=255) cccccTTGGGGGTGTGGGTTTGGCCGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:13414141/67‑1 (MQ=255) cccccTTGGGGGCGTGGGTTTGGGAGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:32393829/67‑1 (MQ=255) ccccaTTTGGGTAGTGGTTTAGGGATTGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:25384202/67‑1 (MQ=255) ccccTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCGCCCTATTTTCAGATCAGTTATTTCGCAt > 1:18804972/1‑68 (MQ=255) ccccTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAt > 1:14853323/1‑68 (MQ=255) ccccTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAt > 1:14164631/1‑68 (MQ=255) ccttttGGGGTGTGGGTTAGGGAGGGGGCAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:27362724/65‑1 (MQ=255) cccTTTGGGGAGTGGGTTAGGGTGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:6276359/68‑1 (MQ=37) cccTTTGGGGAGAGGTTTTGGGACCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:28864788/68‑1 (MQ=255) cccTTTGGGGAGAGGGTTTGGGCGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:2149965/68‑1 (MQ=38) ccTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTa > 1:3763376/1‑68 (MQ=255) cTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTaa > 1:167072/1‑68 (MQ=255) tttGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAat < 1:32920544/68‑1 (MQ=255) gggggggTGTGGGTTCGGCCGCGGGCAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAat < 1:11558914/65‑1 (MQ=255) tGGGGCGTGGGTTTGGGCGCGGGCAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAatat < 1:1712452/68‑1 (MQ=255) tGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAata > 1:20854369/1‑67 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:23737807/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:5551828/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:19635949/1‑68 (MQ=255) ggAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:11910310/1‑68 (MQ=255) gagtGGTTTCGGGAGCGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca < 1:22876444/67‑1 (MQ=255) gagaGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:14655947/1‑67 (MQ=255) gagaGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:1795273/1‑67 (MQ=255) gagaGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATATCGCATTAATATCca < 1:911476/67‑1 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCTCACCCTATTTTCAGATCAGTTATGTCGCATTAATATCcagc > 1:4680224/1‑68 (MQ=39) agagGGTTAGGGAGAGGGGAAAACCCGCCCCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:20044951/1‑68 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:30343168/1‑68 (MQ=255) agagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTACGCATTAATATCcagc > 1:21109820/1‑68 (MQ=255) gagGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagca > 1:6429428/1‑68 (MQ=255) aGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGAccc > 1:13893406/1‑66 (MQ=255) gggAGTGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt < 1:25260202/68‑1 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCTGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:33985493/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:24187933/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:7218434/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:6807424/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:13308900/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:594841/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:5769042/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:8106195/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:5083244/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:20710578/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:22348175/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:446695/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:10106372/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:26017099/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:32660653/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:26981424/1‑67 (MQ=255) ggAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:1178390/1‑67 (MQ=255) gagaGGGGAAACCCCGCACCCTTTTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:3470992/1‑68 (MQ=255) gagaGGGGAAACCCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:28445867/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:14986863/47‑1 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:9779632/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:16162917/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:7583640/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:18596226/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:34152663/1‑68 (MQ=255) gagaGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:26682532/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:174666/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:2022081/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:8582393/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:1557425/1‑68 (MQ=255) agagGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:29128122/1‑68 (MQ=255) | GGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAA > CP009273/4063776‑4063909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |