| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 417,885 | T→G | 11.8% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 417,885 | 0 | T | G | 11.8% | 1221.1 / 25.0 | 398 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| Reads supporting (aligned to +/- strand): ref base T (20/323); new base G (49/2); total (73/325) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.19e-43 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 437 total aligned reads displayed.
CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGAT > CP009273/417818‑417952 | gCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGCTATCCGCCCCCGtcc > 1:12047657/1‑67 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCGCCGtccgcc > 1:32694662/1‑68 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGgccgcc > 1:19267453/1‑68 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGgccgcc > 1:25450542/1‑68 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:20635903/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:1283109/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:3124741/68‑1 (MQ=255) tGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTccc < 1:8699926/68‑1 (MQ=255) tGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTccc < 1:22868827/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:11873174/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:23254800/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:32558571/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:18707576/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:1492296/68‑1 (MQ=255) gCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCGccccccca > 1:1712039/1‑65 (MQ=255) ccGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCGGCCGCCGTGCGCCTCCCGCAAat > 1:33516835/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCGCCCGTCCGCCGCCCCCAAat > 1:7383212/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGGGCGCCGCCCCCCAat > 1:30875471/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCGCCCCCAAat > 1:1775467/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCCGCCGCCGGCCCCAAat > 1:10686409/1‑68 (MQ=255) cGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAat < 1:6219150/67‑1 (MQ=255) ttCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATc < 1:3103335/67‑1 (MQ=255) ttCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATc < 1:10379956/67‑1 (MQ=255) tCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCt < 1:5453358/68‑1 (MQ=255) tCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCt < 1:27175905/68‑1 (MQ=255) tCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCt < 1:19961448/68‑1 (MQ=255) acAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCTCCCCCGTCCTCCTCCCCCAAATATcc < 1:6455665/66‑1 (MQ=255) aggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGGCCCCGGGCGCGGCCCCCAAAGAACCTTCAgg > 1:6969473/1‑67 (MQ=255) aggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGGCCCCGGCCGCGGCCCCCCAATATCCTTgaga > 1:24551712/1‑68 (MQ=255) aggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCa < 1:4361300/66‑1 (MQ=255) aggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCGCCTCCCCCAAATATCATTCTga > 1:5971153/1‑68 (MQ=255) gtaaaTCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:19567410/65‑1 (MQ=255) ggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:34344851/67‑1 (MQ=255) ggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:29640109/67‑1 (MQ=255) ggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:21102193/67‑1 (MQ=255) ggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:13246769/67‑1 (MQ=255) ggaAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:11612613/67‑1 (MQ=255) aaaTCCTGATCCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:16152877/66‑1 (MQ=255) aaTCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatgat < 1:27504008/68‑1 (MQ=255) aaTCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatgat < 1:22753430/68‑1 (MQ=255) aaTCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:13447032/67‑1 (MQ=255) aaTCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:16931904/67‑1 (MQ=255) aaTCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:27431063/67‑1 (MQ=255) tCCTGTT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:18519446/68‑1 (MQ=255) tCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:18353998/68‑1 (MQ=255) tCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:11311163/68‑1 (MQ=255) cTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCGGCGCCCCCAAAAAACCTTAAGATGATGAGt > 1:22547400/1‑68 (MQ=255) t‑CCGGCTATTCCTAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGACTGAt < 1:33884610/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:28899540/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:12209048/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:33113369/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:23459223/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:32310755/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:32128755/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:31913581/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:13774431/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:1419757/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:24015924/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:28475/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:27866559/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:21620175/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:10106215/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:15126730/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:26349974/67‑1 (MQ=255) t‑CCGGCTATTCCGAAAGTTATCCGCCCCCGACCGCCACCCCCCAAAAAACTTAAGATCCTGAGTGAt > 1:25307668/1‑67 (MQ=255) cGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCTCCCCCCAAAAAACTTCAGATGATGAGTGATccg > 1:34233283/1‑67 (MQ=255) cTATTCCGAAAGTTATCCGGCCCCGGCCTCCGCCCCCAAATATCCTGCAGATGCTGAGGGAGCCTGCa > 1:943960/1‑68 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:24477020/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:8111750/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:6770664/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:12478525/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:22372758/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:7681436/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:3564720/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:30614639/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:4760463/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:24273733/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:5171958/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAGCCTGc < 1:19117210/67‑1 (MQ=255) tCCGAAAGTTATCCGCGCCCGTGCGCCGCCCCCAAATATCCTTCAGAGGATGAGGGCTCCGGGATTAg > 1:25027442/1‑68 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:13542733/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:13666522/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:16426131/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:30393986/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:25853916/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:3918252/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:5029193/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:21921616/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:2082176/68‑1 (MQ=255) aGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATg < 1:7145469/68‑1 (MQ=255) gTTATCCGCCCCCGGCCTCCTCCCCCAAAAATCAATCAGATGAAGATTGATCCAGCAATATTCTAtt > 1:23087452/1‑66 (MQ=255) ccGCCCCCGTCCTCCTCCCCCAAATATCCTTCTGATGATGAGTTATGCTGCATTTGGGTATGGCAAgg > 1:12780783/1‑68 (MQ=255) ccGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAgg < 1:15567852/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTTGGCTATTGCAAGGt < 1:28996752/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:26622856/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:5702544/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:20409481/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:17472427/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATACTTCAGATGATTAGTGATCCTGCATTAGGCTAAGGCAAGGt > 1:14698418/1‑68 (MQ=255) ccccGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGa < 1:28808550/67‑1 (MQ=255) | CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGAT‑CCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGAT > CP009273/417818‑417952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |