| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,384,699 | A→C | 6.5% | T273P (ACG→CCG) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,384,699 | 0 | A | C | 6.5% | 1038.1 / 6.7 | 377 | T273P (ACG→CCG) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| Reads supporting (aligned to +/- strand): ref base A (164/183); new base C (3/27); total (167/210) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.66e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 407 total aligned reads displayed.
TAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGC > CP009273/4384632‑4384766 | tAACGGCGATCACGGGCGGCTGGTAATTATCGGGGGCGATCACGGCACGGCGGGGGCTATTCGTATGa < 1:25376298/68‑1 (MQ=255)tAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGa < 1:13177452/68‑1 (MQ=255) aaGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACg > 1:21428218/1‑68 (MQ=255) gCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGCCgggg > 1:32052259/1‑68 (MQ=255) gCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACgggg > 1:7911911/1‑68 (MQ=255) gCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACgggg > 1:17915726/1‑68 (MQ=255) aCGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAgcg > 1:31598394/1‑68 (MQ=255) ggcTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCt < 1:19011288/67‑1 (MQ=255) cgggTAATTATCGGTGGCGAGCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGc < 1:11237613/65‑1 (MQ=255) cgggTAATTAGCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGc < 1:30640402/65‑1 (MQ=255) cTGGTAATTTTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGc < 1:18659951/67‑1 (MQ=255) cTGGTAATTCTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGc < 1:18291465/67‑1 (MQ=255) cTGGTAATTATCGGTGGCGAGCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGc < 1:12194170/67‑1 (MQ=255) cTGGTAATAATCCGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGACGCGGCGCTGc < 1:20843161/67‑1 (MQ=255) tGGTAATTCTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgt < 1:401522/68‑1 (MQ=255) tGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgt < 1:20323526/68‑1 (MQ=255) tGGTAATTATCGGGGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgt < 1:12808889/68‑1 (MQ=255) gggTAATTATCGGTGGCGATCACGGGACGGCGGGGGCTATTCGTAAGACGGGGGAAGCGGCGCTGCgt < 1:9780559/67‑1 (MQ=255) ggTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtg < 1:12470253/68‑1 (MQ=255) aTTATCTGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGCCGGGGGAAGCGGCGCTGCgtgctgg < 1:33306744/68‑1 (MQ=255) aTTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctgg > 1:23054070/1‑68 (MQ=255) aTTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctgg > 1:31296745/1‑68 (MQ=255) ttATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt < 1:27038367/68‑1 (MQ=255) ttATCGGGGGCGAGCACGGCACGGCGGGGGCTATTCGGATGACGGGGGAAGCGGCGCTGCgtgctggt < 1:26596948/68‑1 (MQ=255) tATCGGGGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGCAAGCGGCGCTGCgtgctggtg < 1:10578030/68‑1 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGATGCGGCGCTGCgtgctggt > 1:22426531/1‑66 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:23946081/1‑66 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:32638009/1‑66 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:21126810/1‑66 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:14037024/1‑66 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:25806397/1‑66 (MQ=255) aTCGGTGGCGATCACGGCACGGCGGGGGATATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:24325790/1‑66 (MQ=255) acGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggt > 1:28203185/2‑65 (MQ=255) gggggCGATCACGGCACGGCGGGGGCTATTCGTATGCCGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:11670251/65‑1 (MQ=255) ggTGGCGCTCACGGCACGGCGGGGGCGATTCGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:15689716/68‑1 (MQ=255) ggTGGCGATCACGGCACGGCGGGGGCTATTGGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:17735660/68‑1 (MQ=255) ggTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:1591777/68‑1 (MQ=255) ggTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg > 1:29771290/1‑68 (MQ=255) ggTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:6643920/68‑1 (MQ=255) ggTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:10033176/68‑1 (MQ=255) ggTGGCGATCACGGCACGGCGGGGGCTATTCGTACGCCGGGGGCAGCGGCGCTGCGtgctggtgctgg < 1:14112795/68‑1 (MQ=255) ggTGGCGAGCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGtgctggtgctgg < 1:13576056/68‑1 (MQ=255) gctGGCGAGCACGCCACGGCGGGGGCTATTCGTATCACGGGGGAAGCGGCGCTGCGtgctggggctgg < 1:30968111/66‑1 (MQ=255) tGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGtt > 1:8206166/1‑68 (MQ=255) gagcacggcacggCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGGTTAg < 1:8985400/64‑1 (MQ=255) gATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGt < 1:1936239/68‑1 (MQ=255) cagcacggcagggCGGGGGCTATACGTCTGACGGGGGAAGCGGCGATGCGTTCTGGTGCTGGTTTAg < 1:29037661/64‑1 (MQ=255) aTCACGTCACGGCGTGTGCTAATAGTATCACGGGGGAAGCGTATCTGAGTGCTGGTTCTGGTTTAGTc < 1:14900135/68‑1 (MQ=255) aTCACGGCACGGCGGGGGCTATTCGTAGGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:22170108/68‑1 (MQ=255) tCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:8434683/67‑1 (MQ=255) tCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:7433005/67‑1 (MQ=255) tCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:21917745/67‑1 (MQ=255) tCACGGCACGGCGGGGGCTATTCGTATGACGGGGCAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:33878770/67‑1 (MQ=255) gcacggcacggCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:24597533/66‑1 (MQ=255) gcacggcacggCGGGGGCGATGCGGATGCCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:5277614/66‑1 (MQ=255) acggcacggcGGGGGCTATTCGTATGCCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGa < 1:23496058/68‑1 (MQ=255) acggcacggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGa < 1:30520836/68‑1 (MQ=255) acggcacggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGa > 1:4164134/1‑68 (MQ=255) acggcacggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGa > 1:33503942/1‑68 (MQ=255) acggcacggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGa < 1:5708664/68‑1 (MQ=255) acggcacggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCCGGTGCTGGTTTAGTCCGa > 1:4738068/1‑68 (MQ=255) acggcacggcGGGGGCTATTCGTATGACGGGCGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGa < 1:6223811/68‑1 (MQ=255) acggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGt > 1:26171124/1‑65 (MQ=255) acggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGt > 1:13013751/1‑65 (MQ=255) acggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGt > 1:9476324/1‑65 (MQ=255) acggcGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGt > 1:15485096/1‑65 (MQ=255) acggcGGGGGCTATTCGTATGACGGGGAAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGt > 1:14613758/1‑65 (MQ=255) acggcGGGGGCTATCCGTACGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACt < 1:33051770/68‑1 (MQ=255) ggcggGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGa < 1:16637411/68‑1 (MQ=255) ggcggGGGCCATTCGTACGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGa < 1:32845601/68‑1 (MQ=255) gcggGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGa > 1:31830592/1‑67 (MQ=255) gggggCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGAccc > 1:8013966/1‑68 (MQ=255) ggCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCa > 1:25504944/1‑68 (MQ=255) gCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAg > 1:16144423/1‑68 (MQ=255) cTATTCGTATGCCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAg < 1:1151445/67‑1 (MQ=255) cTATTCGTATGCCGGGGGAAGCGGCGCTGCGTGCTGGTGCGGGTTTAGTCCGAGTACTGACCCGCAg < 1:3908665/67‑1 (MQ=255) cTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTGCTGACCCGCAGt > 1:3550469/1‑68 (MQ=255) cTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAg < 1:29966661/67‑1 (MQ=255) cTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAg < 1:24910222/67‑1 (MQ=255) tactCGGATGCCGCGGCAAGCGGCGCTGCGGGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTg < 1:1990880/65‑1 (MQ=255) tATTCGTCTGACGGGGCAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTg < 1:28702649/68‑1 (MQ=255) tATTCGTATGCCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTg < 1:6929683/68‑1 (MQ=255) tATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTg < 1:9334260/68‑1 (MQ=255) gaTTCGTATGCCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTg < 1:19779144/67‑1 (MQ=255) caatCGAATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTg < 1:10765562/65‑1 (MQ=255) acGTAGGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGaaa < 1:21271587/67‑1 (MQ=255) cGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGaaa > 1:22838812/1‑67 (MQ=255) cGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGaaa > 1:24996194/1‑67 (MQ=255) cGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGaaa > 1:7274302/1‑67 (MQ=255) cGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGaaa > 1:29338493/1‑67 (MQ=255) tGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACAtt > 1:26416104/1‑68 (MQ=255) tGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACAtt > 1:1692992/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTGCGAGTACTGACCCGCAGGGAAAACATTgc > 1:30278910/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAACACATTgc > 1:5885047/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTgc > 1:16420814/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTgc > 1:20170491/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTgc > 1:4925933/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTgc > 1:23269230/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTgc > 1:10978814/1‑68 (MQ=255) aCGGGGGAAGCGGCGCTGCGTGCTGGAGCTGTTTTAGTCCGAGTACTGACCCGAAGTGAAAACATTgc > 1:27372044/1‑68 (MQ=255) | TAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGGGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGC > CP009273/4384632‑4384766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |