BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4538708	438 (1.140)	12 (0.040)	5/94	NT	3.3%	coding (84/903 nt)	fimH	minor component of type 1 fimbriae
*	?	CP009273	= 4538723	325 (1.010)	12 (0.040)	5/94	NT	3.3%	coding (99/903 nt)	fimH	minor component of type 1 fimbriae
Rejected: Frequency below/above cutoff threshold.

Only 100 of 199 total aligned reads displayed.

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4538634‑4538708

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  CP009273/4538723‑4538657

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:30205937/1‑67

 TTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:5077223/1‑68

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAGCC                                                                           >  1:13727581/1‑67

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           <  1:29684922/67‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:14329528/68‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:3810744/68‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:3974897/68‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:10013996/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       >  1:1776909/1‑68

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       >  1:19579548/1‑68

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:1062989/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       >  1:4877164/1‑68

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:28270996/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:22692960/68‑1

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:29173581/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:25620679/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:425636/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:15531543/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:13332599/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAACGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:1472143/1‑68

      ACCCTGTTTGCTGTACTGCTCATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTTTAAAACCGCCAA                                                                      >  1:5438629/1‑68

       CCCTGTTTGCTGTTCTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     <  1:228035/68‑1

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:7818080/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     <  1:84541/68‑1

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGTTAGCGGTACCATTGGCGGTTTTAGCGGCGAATG                               >  1:8263495/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAAGAGGGATAGCGGTACCATTGGCGGTTTTGCAGGCGAATG                               >  1:12907310/1‑67

                                                  GTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGGACCATTGGCGGTTTTACAGGCGAATGCCCAG                          >  1:6973597/1‑68

                                                         GCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT                    >  1:24354205/1‑67

                                                          CCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTA                   >  1:26673831/1‑67

                                                          CCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTA                   >  1:17552099/1‑67

                                                                 AACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCA            >  1:30000436/1‑67

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:30366814/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:4387857/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:9575352/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:21768525/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:27871047/68‑1

                                                                  ACCGCCAATAGGGATAGAGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:8810175/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:28553842/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:26931193/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:9846364/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:27035081/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:9118444/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:8196769/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:6934970/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:31358892/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:6231339/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:5661304/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:31055980/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:16725723/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:20012174/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:26322235/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:21194317/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:16343872/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:15261557/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:24697577/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:13976224/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:24768745/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:25272638/68‑1

                                                                    CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC        >  1:11886765/1‑68

                                                                    CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC        >  1:11592373/1‑68

                                                                    CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC        >  1:30632989/1‑68

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:7588079/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:17058281/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:31783124/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:7130747/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:2929690/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:28782592/68‑1

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:26019385/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:6986651/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:31500256/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:28032304/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:9341366/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:6796362/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:1603697/1‑67

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGGTGTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:3744828/1‑67

                                                                       CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT      <  1:29791067/67‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:108945/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:27411428/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:6690792/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:12482305/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:23110482/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:8416506/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:10450312/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:4446063/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:17947861/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:18252715/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:20925678/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:19381639/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGA               <  1:17418015/57‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGCCCAGCCCATCAGC  >  1:19025263/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:7217582/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:1386984/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:13261729/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:15809014/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:18757745/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:20412722/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:29279467/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:2230469/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:10072656/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    >  1:16415544/1‑66

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4538634‑4538708

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  CP009273/4538723‑4538657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.