New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 725721NA (NA)5 (0.010)
+G		 3/110 NT NA coding (683/4194 nt) rhsC Rhs family putative polymorphic toxin
?CP009273 = 725740 NA (NA)coding (702/4194 nt) rhsC Rhs family putative polymorphic toxin

ACGTTCCACCGCGAAGCCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/725699‑725721
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGT  <  CP009273/725740‑725679
                       |                                                              
ACGTTCCACCGCGAAGCCGCCGGGGGTTTCGCCGCGGGATTCACCGGCGGCGTCGCGGTGGGACG                       >  1:13581480/1‑65
ACGTTCCACCGCGAAGCCGCCGGGGATTTCGCCGCTGAATTGACCGGCGGCGTGGCGGTGGGACG                       >  1:27774692/1‑65
ACGTTCCACCGCGAAGCCGCCGGGGATTTAGCCGCTGAATTCACCGGCGGCTTCGCGGGGGGACG                       >  1:5188432/1‑65
 CGTTCCACCGCGCAGCCGCCGGGGATTTCGCCGCTGAATTCACCGGCGGCGTCGCGGGGGGACG                       >  1:3863020/1‑64
  GTTCCACCGCGAAGCCGCCGGGGATTTCGCCGCTGAATTACCCGGCGGCTTAGCGGTGGGACGTCTGT                  >  1:11318091/1‑68
                  GCCGGGGATTTCGCCGCTTACTTCACCGGCGGCTTCGCGGTGGAACGTCTGTGGGCGCCCGAAGCGGT  <  1:21301959/68‑1
                  GCCGGGGATTTCGCCGCTGAATTCCCCGGCGGCTTCGCGGGGGCCCGTCGGGGTGCGCCCGAAGCGG   >  1:11622012/1‑67
                       |                                                              
ACGTTCCACCGCGAAGCCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/725699‑725721
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTCGCCGCTGAATTCACCGGCGGCTTCGCGGTGGAACGTCTGTGTGCGCCCGAAGCGGT  <  CP009273/725740‑725679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.